PDB entry 3vbh

View 3vbh on RCSB PDB site
Description: Crystal structure of formaldehyde treated human enterovirus 71 (space group R32)
Class: virus
Keywords: virus, hand-foot-and-mouth disease, enterovirus uncoating, pocket factor, adaptor-sensor, icosahedral virus
Deposited on 2012-01-02, released 2012-02-29
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-05-02, with a file datestamp of 2012-04-27.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.217
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Genome Polyprotein, capsid protein VP1
    Species: Human enterovirus 71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B2ZUN0 (0-296)
      • see remark 999 (224)
    Domains in SCOPe 2.06: d3vbha_
  • Chain 'B':
    Compound: Genome Polyprotein, capsid protein VP2
    Species: Human enterovirus 71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3vbhb_
  • Chain 'C':
    Compound: Genome Polyprotein, vapsid protein VP3
    Species: Human enterovirus 71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3vbhc_
  • Chain 'D':
    Compound: Genome Polyprotein, capsid protein VP4
    Species: Human enterovirus 71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SPH, K, NA, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vbhA (A:)
    gdrvadviessigdsvsralthalpaptgqntqvsshrldtgkvpalqaaeigassnasd
    esmietrcvlnshstaettldsffsraglvgeidlplkgttnpngyanwdiditgyaqmr
    rkvelftymrfdaeftfvactptgevvpqllqymfvppgapkpdsreslawqtatnpsvf
    vklsdppaqvsvpfmspasayqwfydgyptfgehkqekdleygampnnmmgtfsvrtvgt
    skskyplvvriymrmkhvrawiprpmrnqnylfkanpnyagnsikptgasrtaittl
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vbhB (B:)
    sdrvaqltignstittqeaaniivgygewpsycsdsdatavdkptrpdvsvnrfytldtk
    lweksskgwywkfpdvltetgvfgqnaqfhylyrsgfcihvqcnaskfhqgallvavlpe
    yvigtvaggtgtedthppykqtqpgadgfelqhpyvldagipisqltvcphqwinlrtnn
    catiivpyinalpfdsalnhcnfgllvvpispldydqgatpvipititlapmcsefaglr
    qavtq
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vbhC (C:)
    gfptelkpgtnqflttddgvsapilpnfhptpcihipgevrnllelcqvetilevnnvpt
    natslmerlrfpvsaqagkgelcavfradpgrngpwqstllgqlcgyytqwsgslevtfm
    ftgsfmatgkmliaytppggplpkdratamlgthviwdfglqssvtlvipwisnthyrah
    ardgvfdyyttglvsiwyqtnyvvpigapntayiialaaaqknftmklckdasdilqtgt
    iq
    

  • Chain 'D':
    No sequence available.