PDB entry 3vbf

View 3vbf on RCSB PDB site
Description: Crystal structure of formaldehyde treated human Enterovirus 71 (space group I23)
Class: virus
Keywords: virus, hand-foot-and-mouth disease, enterovirus uncoating, pocket factor, adaptor-sensor, icosahedral virus
Deposited on 2012-01-02, released 2012-02-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-04-25, with a file datestamp of 2012-04-20.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.236
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Genome Polyprotein, capsid protein VP1
    Species: Human enterovirus 71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B2ZUN0 (0-296)
      • see remark 999 (224)
    Domains in SCOPe 2.07: d3vbfa_
  • Chain 'B':
    Compound: Genome Polyprotein, capsid protein VP2
    Species: Human enterovirus 71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vbfb_
  • Chain 'C':
    Compound: Genome Polyprotein, capsid protein VP3
    Species: Human enterovirus 71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vbfc_
  • Chain 'D':
    Compound: Genome Polyprotein, capsid protein VP4
    Species: Human enterovirus 71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SPH, AMP, K, NA, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3vbfA (A:)
gdrvadviessigdsvsralthalpaptgqntqvsshrldtgkvpalqaaeigassnasd
esmietrcvlnshstaettldsffsraglvgeidlplkgttnpngyanwdiditgyaqmr
rkvelftymrfdaeftfvactptgevvpqllqymfvppgapkpdsreslawqtatnpsvf
vklsdppaqvsvpfmspasayqwfydgyptfgehkqekdleygampnnmmgtfsvrtvgt
skskyplvvriymrmkhvrawiprpmrnqnylfkanpnyagnsikptgasrtaittl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3vbfB (B:)
sdrvaqltignstittqeaaniivgygewpsycsdsdatavdkptrpdvsvnrfytldtk
lweksskgwywkfpdvltetgvfgqnaqfhylyrsgfcihvqcnaskfhqgallvavlpe
yvigtvaggtgtedthppykqtqpgadgfelqhpyvldagipisqltvcphqwinlrtnn
catiivpyinalpfdsalnhcnfgllvvpispldydqgatpvipititlapmcsefaglr
qavtq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3vbfC (C:)
gfptelkpgtnqflttddgvsapilpnfhptpcihipgevrnllelcqvetilevnnvpt
natslmerlrfpvsaqagkgelcavfradpgrngpwqstllgqlcgyytqwsgslevtfm
ftgsfmatgkmliaytppggplpkdratamlgthviwdfglqssvtlvipwisnthyrah
ardgvfdyyttglvsiwyqtnyvvpigapntayiialaaaqknftmklckdasdilqtgt
iq

  • Chain 'D':
    No sequence available.