PDB entry 3vb9

View 3vb9 on RCSB PDB site
Description: Crystal structure of VPA0735 from Vibrio parahaemolyticus in monoclinic form, NorthEast Structural Genomics target VpR109
Class: structural genomics, unknown function
Keywords: Structural Genomics, PSI-Biology, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION
Deposited on 2011-12-31, released 2012-05-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-05-23, with a file datestamp of 2012-05-18.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.224
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Uncharacterized protein VPA0735
    Species: Vibrio parahaemolyticus [TaxId:670]
    Gene: VPA0735
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vb9a_
  • Chain 'B':
    Compound: Uncharacterized protein VPA0735
    Species: Vibrio parahaemolyticus [TaxId:670]
    Gene: VPA0735
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vb9b_
  • Chain 'C':
    Compound: Uncharacterized protein VPA0735
    Species: Vibrio parahaemolyticus [TaxId:670]
    Gene: VPA0735
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vb9c_
  • Chain 'D':
    Compound: Uncharacterized protein VPA0735
    Species: Vibrio parahaemolyticus [TaxId:670]
    Gene: VPA0735
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vb9d_
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3vb9A (A:)
mkkrilavavtsmllsasvfaqetvvpsrvgdlkfesdfptqetmknmlnemdfqratqa
ylwgipassimewlnvsrndfkfeegqmgffntlkqkqgiitanfttpyvigtwnlektg
pliinlpeakmagmmldvhqrvlsdlsllgpdkgkggkylivppgekykdlnpkgyyvir
pktnvvyggirilepdvdrvvkqvvpnittqpyadgklgrkipvaqvpeidwthipkdgl
eywktihqiiqenpveerdrfvmaqlkflgiekgkpfnpteeqkkilleaskvgramaqs
ndytkrftqpywkgtnwkdaisvsldqrsenydelderaawfyeaitvsrgmkstipgfg
qrylvtyqdsdgnwlsgehtyklhvpanvpasnfwsttvydennrlmiindagspdissr
knlkvnsdgsidvyygpkpvkgyennwvqtnpgegwftyfrfygptekmfdkswtmgdie
lvk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vb9A (A:)
etvvpsrvgdlkfesdfptqetmknmlnemdfqratqaylwgipassimewlnvsrndfk
feegqmgffntlkqkqgiitanfttpyvigtwnlektgpliinlpeakmagmmldvhqrv
lsdlsllgpdkgkggkylivppgekykdlnpkgyyvirpktnvvyggirilepdvdrvvk
qvvpnittqpyadgklgrkipvaqvpeidwthipkdgleywktihqiiqenpveerdrfv
maqlkflgiekgkpfnpteeqkkilleaskvgramaqsndytkrftqpywkgtnwkdais
vsldqrsenydelderaawfyeaitvsrgmkstipgfgqrylvtyqdsdgnwlsgehtyk
lhvpanvpasnfwsttvydennrlmiindagspdissrknlkvnsdgsidvyygpkpvkg
yennwvqtnpgegwftyfrfygptekmfdkswtmgdielv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3vb9B (B:)
mkkrilavavtsmllsasvfaqetvvpsrvgdlkfesdfptqetmknmlnemdfqratqa
ylwgipassimewlnvsrndfkfeegqmgffntlkqkqgiitanfttpyvigtwnlektg
pliinlpeakmagmmldvhqrvlsdlsllgpdkgkggkylivppgekykdlnpkgyyvir
pktnvvyggirilepdvdrvvkqvvpnittqpyadgklgrkipvaqvpeidwthipkdgl
eywktihqiiqenpveerdrfvmaqlkflgiekgkpfnpteeqkkilleaskvgramaqs
ndytkrftqpywkgtnwkdaisvsldqrsenydelderaawfyeaitvsrgmkstipgfg
qrylvtyqdsdgnwlsgehtyklhvpanvpasnfwsttvydennrlmiindagspdissr
knlkvnsdgsidvyygpkpvkgyennwvqtnpgegwftyfrfygptekmfdkswtmgdie
lvk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vb9B (B:)
qetvvpsrvgdlkfesdfptqetmknmlnemdfqratqaylwgipassimewlnvsrndf
kfeegqmgffntlkqkqgiitanfttpyvigtwnlektgpliinlpeakmagmmldvhqr
vlsdlsllgpdkgkggkylivppgekykdlnpkgyyvirpktnvvyggirilepdvdrvv
kqvvpnittqpyadgklgrkipvaqvpeidwthipkdgleywktihqiiqenpveerdrf
vmaqlkflgiekgkpfnpteeqkkilleaskvgramaqsndytkrftqpywkgtnwkdai
svsldqrsenydelderaawfyeaitvsrgmkstipgfgqrylvtyqdsdgnwlsgehty
klhvpanvpasnfwsttvydennrlmiindagspdissrknlkvnsdgsidvyygpkpvk
gyennwvqtnpgegwftyfrfygptekmfdkswtmgdielvk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3vb9C (C:)
mkkrilavavtsmllsasvfaqetvvpsrvgdlkfesdfptqetmknmlnemdfqratqa
ylwgipassimewlnvsrndfkfeegqmgffntlkqkqgiitanfttpyvigtwnlektg
pliinlpeakmagmmldvhqrvlsdlsllgpdkgkggkylivppgekykdlnpkgyyvir
pktnvvyggirilepdvdrvvkqvvpnittqpyadgklgrkipvaqvpeidwthipkdgl
eywktihqiiqenpveerdrfvmaqlkflgiekgkpfnpteeqkkilleaskvgramaqs
ndytkrftqpywkgtnwkdaisvsldqrsenydelderaawfyeaitvsrgmkstipgfg
qrylvtyqdsdgnwlsgehtyklhvpanvpasnfwsttvydennrlmiindagspdissr
knlkvnsdgsidvyygpkpvkgyennwvqtnpgegwftyfrfygptekmfdkswtmgdie
lvk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vb9C (C:)
etvvpsrvgdlkfesdfptqetmknmlnemdfqratqaylwgipassimewlnvsrndfk
feegqmgffntlkqkqgiitanfttpyvigtwnlektgpliinlpeakmagmmldvhqrv
lsdlsllgpdkgkggkylivppgekykdlnpkgyyvirpktnvvyggirilepdvdrvvk
qvvpnittqpyadgklgrkipvaqvpeidwthipkdgleywktihqiiqenpveerdrfv
maqlkflgiekgkpfnpteeqkkilleaskvgramaqsndytkrftqpywkgtnwkdais
vsldqrsenydelderaawfyeaitvsrgmkstipgfgqrylvtyqdsdgnwlsgehtyk
lhvpanvpasnfwsttvydennrlmiindagspdissrknlkvnsdgsidvyygpkpvkg
yennwvqtnpgegwftyfrfygptekmfdkswtmgdielv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3vb9D (D:)
mkkrilavavtsmllsasvfaqetvvpsrvgdlkfesdfptqetmknmlnemdfqratqa
ylwgipassimewlnvsrndfkfeegqmgffntlkqkqgiitanfttpyvigtwnlektg
pliinlpeakmagmmldvhqrvlsdlsllgpdkgkggkylivppgekykdlnpkgyyvir
pktnvvyggirilepdvdrvvkqvvpnittqpyadgklgrkipvaqvpeidwthipkdgl
eywktihqiiqenpveerdrfvmaqlkflgiekgkpfnpteeqkkilleaskvgramaqs
ndytkrftqpywkgtnwkdaisvsldqrsenydelderaawfyeaitvsrgmkstipgfg
qrylvtyqdsdgnwlsgehtyklhvpanvpasnfwsttvydennrlmiindagspdissr
knlkvnsdgsidvyygpkpvkgyennwvqtnpgegwftyfrfygptekmfdkswtmgdie
lvk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vb9D (D:)
etvvpsrvgdlkfesdfptqetmknmlnemdfqratqaylwgipassimewlnvsrndfk
feegqmgffntlkqkqgiitanfttpyvigtwnlektgpliinlpeakmagmmldvhqrv
lsdlsllgpdkgkggkylivppgekykdlnpkgyyvirpktnvvyggirilepdvdrvvk
qvvpnittqpyadgklgrkipvaqvpeidwthipkdgleywktihqiiqenpveerdrfv
maqlkflgiekgkpfnpteeqkkilleaskvgramaqsndytkrftqpywkgtnwkdais
vsldqrsenydelderaawfyeaitvsrgmkstipgfgqrylvtyqdsdgnwlsgehtyk
lhvpanvpasnfwsttvydennrlmiindagspdissrknlkvnsdgsidvyygpkpvkg
yennwvqtnpgegwftyfrfygptekmfdkswtmgdielv