PDB entry 3v93

View 3v93 on RCSB PDB site
Description: unliganded structure of TcrPDEC1 catalytic domain
Class: hydrolase
Keywords: parasite, phosphodiesterases,, HYDROLASE
Deposited on 2011-12-23, released 2012-02-22
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-01-09, with a file datestamp of 2013-01-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.216
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cyclic nucleotide specific phosphodiesterase
    Species: Trypanosoma cruzi [TaxId:5693]
    Gene: PDEC, Trypanosoma cruzi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v93a_
  • Chain 'B':
    Compound: Cyclic nucleotide specific phosphodiesterase
    Species: Trypanosoma cruzi [TaxId:5693]
    Gene: PDEC, Trypanosoma cruzi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v93b_
  • Chain 'C':
    Compound: Cyclic nucleotide specific phosphodiesterase
    Species: Trypanosoma cruzi [TaxId:5693]
    Gene: PDEC, Trypanosoma cruzi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v93c_
  • Chain 'D':
    Compound: Cyclic nucleotide specific phosphodiesterase
    Species: Trypanosoma cruzi [TaxId:5693]
    Gene: PDEC, Trypanosoma cruzi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v93d_
  • Chain 'E':
    Compound: Cyclic nucleotide specific phosphodiesterase
    Species: Trypanosoma cruzi [TaxId:5693]
    Gene: PDEC, Trypanosoma cruzi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v93e_
  • Chain 'F':
    Compound: Cyclic nucleotide specific phosphodiesterase
    Species: Trypanosoma cruzi [TaxId:5693]
    Gene: PDEC, Trypanosoma cruzi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v93f_
  • Chain 'G':
    Compound: Cyclic nucleotide specific phosphodiesterase
    Species: Trypanosoma cruzi [TaxId:5693]
    Gene: PDEC, Trypanosoma cruzi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v93g_
  • Chain 'H':
    Compound: Cyclic nucleotide specific phosphodiesterase
    Species: Trypanosoma cruzi [TaxId:5693]
    Gene: PDEC, Trypanosoma cruzi
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v93h_
  • Heterogens: ZN, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3v93A (A:)
gvsghrdmistrrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlq
svamhvalawdffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakp
lmehltpleckaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafel
lnvtefdftssmdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedr
lealslllhaadigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveks
qipfldffviptfdllhqlfpsieeplhnlrklrelyaakagvtt

    Sequence, based on observed residues (ATOM records): (download) 
    >3v93A (A:)
trrlppsivqdtilavvppkscaaivdlrdwgfdtfevasrvpsvlqsvamhvalawdff
asqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakplmehltpleckaa
afaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafellnvtefdftssmd
nasflefknivshlightdmslhsetvakhgaklsaggfdctckedrlealslllhaadi
gassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveksqipfldffviptf
dllhqlfpsieeplhnlrklrelyaakag

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3v93B (B:)
gvsghrdmistrrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlq
svamhvalawdffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakp
lmehltpleckaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafel
lnvtefdftssmdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedr
lealslllhaadigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveks
qipfldffviptfdllhqlfpsieeplhnlrklrelyaakagvtt

    Sequence, based on observed residues (ATOM records): (download) 
    >3v93B (B:)
trrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlqsvamhvalaw
dffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakplmehltplec
kaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafellnvtefdfts
smdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedrlealslllha
adigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveksqipfldffvi
ptfdllhqlfpsieeplhnlrklrelyaakagv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3v93C (C:)
gvsghrdmistrrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlq
svamhvalawdffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakp
lmehltpleckaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafel
lnvtefdftssmdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedr
lealslllhaadigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveks
qipfldffviptfdllhqlfpsieeplhnlrklrelyaakagvtt

    Sequence, based on observed residues (ATOM records): (download) 
    >3v93C (C:)
trrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlqsvamhvalaw
dffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakplmehltplec
kaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafellnvtefdfts
smdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedrlealslllha
adigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveksqipfldffvi
ptfdllhqlfpsieeplhnlrklrelyaakagv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3v93D (D:)
gvsghrdmistrrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlq
svamhvalawdffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakp
lmehltpleckaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafel
lnvtefdftssmdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedr
lealslllhaadigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveks
qipfldffviptfdllhqlfpsieeplhnlrklrelyaakagvtt

    Sequence, based on observed residues (ATOM records): (download) 
    >3v93D (D:)
trrlppsivqdtilavvppksvdlrdwgfdtfevasrvpsvlqsvamhvalawdffasqe
eaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakplmehltpleckaaafaa
lthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafellnvtefdftssmdnasf
lefknivshlightdmslhsetvakhgaklsaggfdctckedrlealslllhaadigass
rgvaiarkwlvilqefadqaederrrglpvtpgfetpssveksqipfldffviptfdllh
qlfpsieeplhnlrklrelyaaka

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3v93E (E:)
gvsghrdmistrrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlq
svamhvalawdffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakp
lmehltpleckaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafel
lnvtefdftssmdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedr
lealslllhaadigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveks
qipfldffviptfdllhqlfpsieeplhnlrklrelyaakagvtt

    Sequence, based on observed residues (ATOM records): (download) 
    >3v93E (E:)
trrlppsivqdtilavvppkscatdvdlrdwgfdtfevasrvpsvlqsvamhvalawdff
asqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakplmehltpleckaa
afaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafellnvtefdftssmd
nasflefknivshlightdmslhsetvakhgaklsaggfdctckedrlealslllhaadi
gassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveksqipfldffviptf
dllhqlfpsieeplhnlrklrelyaakag

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3v93F (F:)
gvsghrdmistrrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlq
svamhvalawdffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakp
lmehltpleckaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafel
lnvtefdftssmdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedr
lealslllhaadigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveks
qipfldffviptfdllhqlfpsieeplhnlrklrelyaakagvtt

    Sequence, based on observed residues (ATOM records): (download) 
    >3v93F (F:)
trrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlqsvamhvalaw
dffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakplmehltplec
kaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafellnvtefdfts
smdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedrlealslllha
adigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveksqipfldffvi
ptfdllhqlfpsieeplhnlrklrelyaakagvt

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3v93G (G:)
gvsghrdmistrrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlq
svamhvalawdffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakp
lmehltpleckaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafel
lnvtefdftssmdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedr
lealslllhaadigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveks
qipfldffviptfdllhqlfpsieeplhnlrklrelyaakagvtt

    Sequence, based on observed residues (ATOM records): (download) 
    >3v93G (G:)
trrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlqsvamhvalaw
dffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakplmehltplec
kaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafellnvtefdfts
smdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedrlealslllha
adigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveksqipfldffvi
ptfdllhqlfpsieeplhnlrklrelyaakagvt

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3v93H (H:)
gvsghrdmistrrlppsivqdtilavvppkscaaigtdvdlrdwgfdtfevasrvpsvlq
svamhvalawdffasqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakp
lmehltpleckaaafaalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafel
lnvtefdftssmdnasflefknivshlightdmslhsetvakhgaklsaggfdctckedr
lealslllhaadigassrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveks
qipfldffviptfdllhqlfpsieeplhnlrklrelyaakagvtt

    Sequence, based on observed residues (ATOM records): (download) 
    >3v93H (H:)
trrlppsivqdtilavvppkscaavdlrdwgfdtfevasrvpsvlqsvamhvalawdffa
sqeeaqkwaflvaavennyrpnpyhnaihaadvlqgtfslvsaakplmehltpleckaaa
faalthdvchpgrtnaflaavqdpvsfkfsgkgtleqlhtatafellnvtefdftssmdn
asflefknivshlightdmslhsetvakhgaklsaggfdctckedrlealslllhaadig
assrgvaiarkwlvilqefadqaederrrglpvtpgfetpssveksqipfldffviptfd
llhqlfpsieeplhnlrklrelyaakag