PDB entry 3v6f

View 3v6f on RCSB PDB site
Description: Crystal Structure of an anti-HBV e-antigen monoclonal Fab fragment (e6), unbound
Class: immune system
Keywords: immunoglobulin domain, antibody Fab fragment, IMMUNE SYSTEM
Deposited on 2011-12-19, released 2013-02-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-02-06, with a file datestamp of 2013-02-01.
Experiment type: XRAY
Resolution: 2.52 Å
R-factor: 0.181
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fab e6 Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V6F (0-223)
    Domains in SCOPe 2.08: d3v6fa_
  • Chain 'B':
    Compound: Fab e6 Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V6F (0-218)
    Domains in SCOPe 2.08: d3v6fb1, d3v6fb2
  • Chain 'C':
    Compound: Fab e6 Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V6F (0-223)
    Domains in SCOPe 2.08: d3v6fc_
  • Chain 'D':
    Compound: Fab e6 Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V6F (0-218)
    Domains in SCOPe 2.08: d3v6fd1, d3v6fd2
  • Chain 'E':
    Compound: Fab e6 Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V6F (0-223)
    Domains in SCOPe 2.08: d3v6fe_
  • Chain 'F':
    Compound: Fab e6 Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V6F (0-218)
    Domains in SCOPe 2.08: d3v6ff1, d3v6ff2
  • Chain 'H':
    Compound: Fab e6 Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V6F (0-223)
    Domains in SCOPe 2.08: d3v6fh_
  • Chain 'L':
    Compound: Fab e6 Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3V6F (0-218)
    Domains in SCOPe 2.08: d3v6fl1, d3v6fl2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3v6fA (A:)
evqlvesggdlvkpggslklscaasgftfssygmswvrqtpdkrlewvatissggnyiyy
pdtvkgrftisrdnakntlylqmsslksedtamyyctregaysgsssypmdywgqgtsvt
vssakttppsvyplapgcgdttgssvtlgclvkgyfpesvtvtwnsgslsssvhtfpall
qsglytmsssvtvpsstwpsqtvtcsvahpassttvdkklepsg

    Sequence, based on observed residues (ATOM records): (download) 
    >3v6fA (A:)
evqlvesggdlvkpggslklscaasgftfssygmswvrqtpdkrlewvatissggnyiyy
pdtvkgrftisrdnakntlylqmsslksedtamyyctregaysgsssypmdywgqgtsvt
vssakttppsvyplapgssvtlgclvkgyfpesvtvtwnsgslsssvhtfpallqsglyt
msssvtvpsstwpsqtvtcsvahpassttvdkklepsg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3v6fB (B:)
nimmtqspsslavsagekvtmnckssqsvlyssnqknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltissvqtedlavyychqylssymytfgggtkleikradaap
tvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdsty
smsstltltkdeyerhnsytceathktstspivksfnrn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3v6fC (C:)
evqlvesggdlvkpggslklscaasgftfssygmswvrqtpdkrlewvatissggnyiyy
pdtvkgrftisrdnakntlylqmsslksedtamyyctregaysgsssypmdywgqgtsvt
vssakttppsvyplapgcgdttgssvtlgclvkgyfpesvtvtwnsgslsssvhtfpall
qsglytmsssvtvpsstwpsqtvtcsvahpassttvdkklepsg

    Sequence, based on observed residues (ATOM records): (download) 
    >3v6fC (C:)
evqlvesggdlvkpggslklscaasgftfssygmswvrqtpdkrlewvatissggnyiyy
pdtvkgrftisrdnakntlylqmsslksedtamyyctregaysgsssypmdywgqgtsvt
vssakttppsvyplapssvtlgclvkgyfpesvtvtwnssvhtfpallqsglytmsssvt
vpsstwpsqtvtcsvahpassttvdkklepsg

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3v6fD (D:)
nimmtqspsslavsagekvtmnckssqsvlyssnqknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltissvqtedlavyychqylssymytfgggtkleikradaap
tvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdsty
smsstltltkdeyerhnsytceathktstspivksfnrn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3v6fE (E:)
evqlvesggdlvkpggslklscaasgftfssygmswvrqtpdkrlewvatissggnyiyy
pdtvkgrftisrdnakntlylqmsslksedtamyyctregaysgsssypmdywgqgtsvt
vssakttppsvyplapgcgdttgssvtlgclvkgyfpesvtvtwnsgslsssvhtfpall
qsglytmsssvtvpsstwpsqtvtcsvahpassttvdkklepsg

    Sequence, based on observed residues (ATOM records): (download) 
    >3v6fE (E:)
evqlvesggdlvkpggslklscaasgftfssygmswvrqtpdkrlewvatissggnyiyy
pdtvkgrftisrdnakntlylqmsslksedtamyyctregaysgsssypmdywgqgtsvt
vssakttppsvyplapssvtlgclvkgyfpesvtvtwnssvhtfpallqsglytmsssvt
vpsstwpsqtvtcsvahpassttvdkklepsg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3v6fF (F:)
nimmtqspsslavsagekvtmnckssqsvlyssnqknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltissvqtedlavyychqylssymytfgggtkleikradaap
tvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdsty
smsstltltkdeyerhnsytceathktstspivksfnrn

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3v6fH (H:)
evqlvesggdlvkpggslklscaasgftfssygmswvrqtpdkrlewvatissggnyiyy
pdtvkgrftisrdnakntlylqmsslksedtamyyctregaysgsssypmdywgqgtsvt
vssakttppsvyplapgcgdttgssvtlgclvkgyfpesvtvtwnsgslsssvhtfpall
qsglytmsssvtvpsstwpsqtvtcsvahpassttvdkklepsg

    Sequence, based on observed residues (ATOM records): (download) 
    >3v6fH (H:)
evqlvesggdlvkpggslklscaasgftfssygmswvrqtpdkrlewvatissggnyiyy
pdtvkgrftisrdnakntlylqmsslksedtamyyctregaysgsssypmdywgqgtsvt
vssakttppsvyplapssvtlgclvkgyfpesvtvtwnsgsssvhtfpallqsglytmss
svtvpsstwpsqtvtcsvahpassttvdkklepsg

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3v6fL (L:)
nimmtqspsslavsagekvtmnckssqsvlyssnqknylawyqqkpgqspklliywastr
esgvpdrftgsgsgtdftltissvqtedlavyychqylssymytfgggtkleikradaap
tvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdsty
smsstltltkdeyerhnsytceathktstspivksfnrn