PDB entry 3v62

View 3v62 on RCSB PDB site
Description: Structure of the S. cerevisiae Srs2 C-terminal domain in complex with PCNA conjugated to SUMO on lysine 164
Class: protein binding/DNA binding protein
Keywords: UBIQUITIN-LIKE PROTEIN PCNA, POST-TRANSLATIONAL MODIFICATION DNA REPLICATION DNA DAMAGE RESPONSE, SRS2, NEM MODIFICATION ON PCNA CYS22 AND CYS81 REDUCTIVE METHYLATION OF ALL LYSINE RESIDUES ON SMT3, NUCLEAR, PROTEIN BINDING-DNA BINDING PROTEIN complex
Deposited on 2011-12-18, released 2012-02-29
The last revision prior to the SCOPe 2.02 freeze date was dated 2013-04-03, with a file datestamp of 2013-03-29.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.187
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Ubiquitin-like protein SMT3
  Species: Saccharomyces cerevisiae [TaxId:559292]
  Gene: D9719.15, SMT3, YDR510W
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q12306 (5-83)
• Chain 'B':
  Compound: Proliferating Cell Nuclear Antigen
  Species: Saccharomyces cerevisiae [TaxId:559292]
  Gene: POL30, YBR0811, YBR088C
  Database cross-references and differences (RAF-indexed):
  • Uniprot P15873 (0-End)
    • engineered mutation (126)
• Chain 'C':
  Compound: ATP-dependent DNA helicase SRS2
  Species: Saccharomyces cerevisiae [TaxId:559292]
  Gene: HPR5, J0913, RADH, SRS2, YJL092W
  Database cross-references and differences (RAF-indexed):
  • Uniprot P12954 (Start-68)
• Chain 'D':
  Compound: Ubiquitin-like protein SMT3
  Species: Saccharomyces cerevisiae [TaxId:559292]
  Gene: D9719.15, SMT3, YDR510W
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q12306 (5-83)
  Domains in SCOPe 2.02: d3v62d_
• Chain 'E':
  Compound: Proliferating Cell Nuclear Antigen
  Species: Saccharomyces cerevisiae [TaxId:559292]
  Gene: POL30, YBR0811, YBR088C
  Database cross-references and differences (RAF-indexed):
  • Uniprot P15873 (0-End)
    • engineered mutation (126)
• Chain 'F':
  Compound: ATP-dependent DNA helicase SRS2
  Species: Saccharomyces cerevisiae [TaxId:559292]
  Gene: HPR5, J0913, RADH, SRS2, YJL092W
  Database cross-references and differences (RAF-indexed):
  • Uniprot P12954 (Start-68)
• Heterogens: NEQ, SO4, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  Sequence, based on SEQRES records: (download)
  

  >3v62D (D:)
  gshmrpethinlkvsdgsseiffkikkttplrrlmeafakrqgkemdslrflydgiriqa
  dqtpedldmedndiieahreqigg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3v62D (D:)
  pethinlkvsdgsseiffkikkttplrrlmeafakrqgkemdslrflydgiriqadqtpe
  dldmedndiieahreqigg
  

  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.