PDB entry 3v56

View 3v56 on RCSB PDB site
Description: Re-refinement of PDB entry 1OSG - Complex between BAFF and a BR3 derived peptide presented in a beta-hairpin scaffold - reveals an additonal copy of the peptide.
Class: immune system
Keywords: jelly-roll, beta hairpin, protein-peptide complex, immune system
Deposited on 2011-12-16, released 2012-03-28
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-02-20, with a file datestamp of 2013-02-15.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.165
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tumor necrosis factor ligand superfamily member 13b
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF13B, BAFF, BLYS, TALL1, TNFSF20, ZTNF4, UNQ401/PRO738
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3v56a_
  • Chain 'B':
    Compound: tumor necrosis factor ligand superfamily member 13b
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF13B, BAFF, BLYS, TALL1, TNFSF20, ZTNF4, UNQ401/PRO738
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3v56b_
  • Chain 'C':
    Compound: tumor necrosis factor ligand superfamily member 13b
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF13B, BAFF, BLYS, TALL1, TNFSF20, ZTNF4, UNQ401/PRO738
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3v56c_
  • Chain 'D':
    Compound: tumor necrosis factor ligand superfamily member 13b
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF13B, BAFF, BLYS, TALL1, TNFSF20, ZTNF4, UNQ401/PRO738
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3v56d_
  • Chain 'E':
    Compound: tumor necrosis factor ligand superfamily member 13b
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF13B, BAFF, BLYS, TALL1, TNFSF20, ZTNF4, UNQ401/PRO738
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3v56e_
  • Chain 'F':
    Compound: tumor necrosis factor ligand superfamily member 13b
    Species: Homo sapiens [TaxId:9606]
    Gene: TNFSF13B, BAFF, BLYS, TALL1, TNFSF20, ZTNF4, UNQ401/PRO738
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3v56f_
  • Chain 'G':
    Compound: BR3 derived peptive
    Database cross-references and differences (RAF-indexed):
    • PDB 3V56
  • Chain 'H':
    Compound: BR3 derived peptive
    Database cross-references and differences (RAF-indexed):
    • PDB 3V56
  • Chain 'I':
    Compound: BR3 derived peptive
    Database cross-references and differences (RAF-indexed):
    • PDB 3V56
  • Chain 'J':
    Compound: BR3 derived peptive
    Database cross-references and differences (RAF-indexed):
    • PDB 3V56
  • Chain 'K':
    Compound: BR3 derived peptive
    Database cross-references and differences (RAF-indexed):
    • PDB 3V56
  • Chain 'L':
    Compound: BR3 derived peptive
    Database cross-references and differences (RAF-indexed):
    • PDB 3V56
  • Chain 'Z':
    Compound: BR3 derived peptive
    Database cross-references and differences (RAF-indexed):
    • PDB 3V56
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3v56A (A:)
    gshmelqghhaeklpagagapkagleeapavtaglkifeppapgegnssqnsrnkravqg
    peetvtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiyg
    qvlytdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegd
    elqlaiprenaqisldgdvtffgalkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >3v56A (A:)
    vtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiygqvly
    tdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegdelql
    aiprenaqisldgdvtffgalkll
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3v56B (B:)
    gshmelqghhaeklpagagapkagleeapavtaglkifeppapgegnssqnsrnkravqg
    peetvtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiyg
    qvlytdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegd
    elqlaiprenaqisldgdvtffgalkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >3v56B (B:)
    vtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiygqvly
    tdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegdelql
    aiprenaqisldgdvtffgalkll
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3v56C (C:)
    gshmelqghhaeklpagagapkagleeapavtaglkifeppapgegnssqnsrnkravqg
    peetvtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiyg
    qvlytdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegd
    elqlaiprenaqisldgdvtffgalkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >3v56C (C:)
    vtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiygqvly
    tdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegdelql
    aiprenaqisldgdvtffgalkll
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3v56D (D:)
    gshmelqghhaeklpagagapkagleeapavtaglkifeppapgegnssqnsrnkravqg
    peetvtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiyg
    qvlytdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegd
    elqlaiprenaqisldgdvtffgalkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >3v56D (D:)
    vtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiygqvly
    tdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegdelql
    aiprenaqisldgdvtffgalkll
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3v56E (E:)
    gshmelqghhaeklpagagapkagleeapavtaglkifeppapgegnssqnsrnkravqg
    peetvtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiyg
    qvlytdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegd
    elqlaiprenaqisldgdvtffgalkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >3v56E (E:)
    vtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiygqvly
    tdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegdelql
    aiprenaqisldgdvtffgalkll
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3v56F (F:)
    gshmelqghhaeklpagagapkagleeapavtaglkifeppapgegnssqnsrnkravqg
    peetvtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiyg
    qvlytdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegd
    elqlaiprenaqisldgdvtffgalkll
    

    Sequence, based on observed residues (ATOM records): (download)
    >3v56F (F:)
    vtqdclqliadsetptiqkgsytfvpwllsfkrgsaleekenkilvketgyffiygqvly
    tdktyamghliqrkkvhvfgdelslvtlfrciqnmpetlpnnscysagiakleegdelql
    aiprenaqisldgdvtffgalkll
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'Z':
    No sequence available.