PDB entry 3v4z

View 3v4z on RCSB PDB site
Description: D-alanine--D-alanine ligase from Yersinia pestis
Class: ligase
Keywords: structural genomics, Center for Structural Genomics of Infectious Diseases, CSGID, peptidoglycan synthesis, LIGASE
Deposited on 2011-12-15, released 2011-12-28
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-12-28, with a file datestamp of 2011-12-23.
Experiment type: XRAY
Resolution: 2.69 Å
R-factor: 0.209
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: d-alanine--d-alanine ligase
    Species: Yersinia pestis [TaxId:214092]
    Gene: ddl, ddlB, y3624, YPO0557, YP_3627
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v4za1, d3v4za2
  • Chain 'B':
    Compound: d-alanine--d-alanine ligase
    Species: Yersinia pestis [TaxId:214092]
    Gene: ddl, ddlB, y3624, YPO0557, YP_3627
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3v4zb1, d3v4zb2
  • Heterogens: PEG, PGE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3v4zA (A:)
snamaekvavllggtsaerevsllsgqavlaglkeagidaygvdtkdfpvtqlkeqgfdk
vfialhgrggedgtlqgvleflqlpytgsgvmasaltmdklrtklvwqalglpispyval
nrqqfetlspeelvacvaklglplivkpshegssvgmskvdhaselqkalveafqhdsdv
liekwlsgpeftvailgdevlpsiriqppgvfydydakylsdktqyfcpsglsdeseqql
aalalqayhaldcsgwgrvdvmqdrdghfyllevntspgmtshslvpmaarqyglsfsql
varilmlad

    Sequence, based on observed residues (ATOM records): (download) 
    >3v4zA (A:)
aekvavllggtsaerevsllsgqavlaglkeagidaygvdtkdfpvtqlkeqgfdkvfia
lhgrggedgtlqgvleflqlpytgsgvmasaltmdklrtklvwqalglpispyvalnrqq
fetlspeelvacvaklglplivkpshegssvgmskvdhaselqkalveafqhdsdvliek
wlsgpeftvailgdevlpsiriqppgktqyfcpsglsdeseqqlaalalqayhaldcsgw
grvdvmqdrdghfyllevntspgmtshslvpmaarqyglsfsqlvarilmlad

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3v4zB (B:)
snamaekvavllggtsaerevsllsgqavlaglkeagidaygvdtkdfpvtqlkeqgfdk
vfialhgrggedgtlqgvleflqlpytgsgvmasaltmdklrtklvwqalglpispyval
nrqqfetlspeelvacvaklglplivkpshegssvgmskvdhaselqkalveafqhdsdv
liekwlsgpeftvailgdevlpsiriqppgvfydydakylsdktqyfcpsglsdeseqql
aalalqayhaldcsgwgrvdvmqdrdghfyllevntspgmtshslvpmaarqyglsfsql
varilmlad

    Sequence, based on observed residues (ATOM records): (download) 
    >3v4zB (B:)
maekvavllggtsaerevsllsgqavlaglkeagidaygvdtkdfpvtqlkeqgfdkvfi
alhgrggedgtlqgvleflqlpytgsgvmasaltmdklrtklvwqalglpispyvalnrq
qfetlspeelvacvaklglplivkpshgmskvdhaselqkalveafqhdsdvliekwlsg
peftvailgdevlpsiriqpptqyfcpsglsdeseqqlaalalqayhaldcsgwgrvdvm
qdrdghfyllevntspgmtshslvpmaarqyglsfsqlvarilmlad