PDB entry 3ubu

View 3ubu on RCSB PDB site
Description: Crystal structure of agkisacucetin, a GpIb-binding snaclec (snake C-type lectin) that inhibits platelet
Class: toxin
Keywords: platelet inhibiting, agkisacucetin, dimer, toxin, C-type lectin-like, GPIb inhibitor, GPIb Binding
Deposited on 2011-10-25, released 2012-04-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-04-11, with a file datestamp of 2012-04-06.
Experiment type: XRAY
Resolution: 1.91 Å
R-factor: 0.193
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Agglucetin subunit alpha-1
    Species: Deinagkistrodon acutus [TaxId:36307]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8JIV9 (Start-130)
      • conflict (123)
    Domains in SCOPe 2.08: d3ubua_
  • Chain 'B':
    Compound: Agglucetin subunit beta-2
    Species: Deinagkistrodon acutus [TaxId:36307]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8AYA3 (0-125)
      • conflict (9)
      • see remark 999 (90)
    Domains in SCOPe 2.08: d3ubub_
  • Heterogens: SO4, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ubuA (A:)
dvdclpgwsaydqscyrvfkllktwddaekfcterpkgghlvsiesagerdfvaqlvsen
kqtdnvwlglkiqskgqqcstewtdgssvsyenfseyqskkcfvlekntgfrtwlnlncg
seysfvckspp

    Sequence, based on observed residues (ATOM records): (download) 
    >3ubuA (A:)
vdclpgwsaydqscyrvfkllktwddaekfcterpkgghlvsiesagerdfvaqlvsenk
qtdnvwlglkiqskgqqcstewtdgssvsyenfseyqskkcfvlekntgfrtwlnlncgs
eysfvckspp

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ubuB (B:)
gfccplrwsayeghcylvvkekktwddaekfcteqrkgghlvsvhsreeadflvhlaypi
ldlsliwmglsnmwndckrewsdgtkldfkswaktsdcligktdgdnqwlnmdcskkhyf
vckfkl