PDB entry 3ubs

View 3ubs on RCSB PDB site
Description: Crystal structure of E. coli dihydrodipicolinate synthase with pyruvate and succinic semi-aldehyde bound in active site
Class: lyase
Keywords: alpha/beta barrel, tim barrel, lyase, amino-acid biosynthesis, schiff base
Deposited on 2011-10-24, released 2011-11-02
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-04-25, with a file datestamp of 2012-04-20.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.149
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: b2478, dapA, JW2463
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ubsa_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Escherichia coli [TaxId:83333]
    Gene: b2478, dapA, JW2463
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ubsb_
  • Heterogens: K, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ubsA (A:)
mftgsivaivtpmdekgnvcraslkklidyhvasgtsaivsvgttgesatlnhdehadvv
mmtldladgripviagtganataeaisltqrfndsgivgcltvtpyynrpsqeglyqhfk
aiaehtdlpqilynvpsrtgcdllpetvgrlakvkniigixeatgnltrvnqikelvsdd
fvllsgddasaldfmqlgghgvisvtanvaardmaqmcklaaeghfaearvinqrlmplh
nklfvepnpipvkwackelglvatdtlrlpmtpitdsgretvraalkhagll

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ubsB (B:)
mftgsivaivtpmdekgnvcraslkklidyhvasgtsaivsvgttgesatlnhdehadvv
mmtldladgripviagtganataeaisltqrfndsgivgcltvtpyynrpsqeglyqhfk
aiaehtdlpqilynvpsrtgcdllpetvgrlakvkniigixeatgnltrvnqikelvsdd
fvllsgddasaldfmqlgghgvisvtanvaardmaqmcklaaeghfaearvinqrlmplh
nklfvepnpipvkwackelglvatdtlrlpmtpitdsgretvraalkhagll