PDB entry 3u82

View 3u82 on RCSB PDB site
Description: Binding of herpes simplex virus glycoprotein D to nectin-1 exploits host cell adhesion
Class: viral protein/cell adhesion
Keywords: HSV-1 gD, nectin-1, binding mode, nectin-1 dimerization preclusion, VIRAL PROTEIN-CELL ADHESION complex
Deposited on 2011-10-15, released 2012-03-21
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-03-21, with a file datestamp of 2012-03-16.
Experiment type: XRAY
Resolution: 3.16 Å
R-factor: 0.322
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Envelope glycoprotein D
    Species: Human herpesvirus 1 [TaxId:10299]
    Gene: gD, US6
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3u82a_
  • Chain 'B':
    Compound: Poliovirus receptor-related protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: PVRL1, HVEC, PRR1
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3u82A (A:)
kyalvdaslkmadpnrfrgkdlpvldqltdppgvrrvyhiqaglpdpfqppslpitvyya
vleracrsvllnapseapqivrgasedvrkqpynltiawfrmggncaipitvmeytecsy
nkslgacpirtqprwnyydsfsavsednlgflmhapafetagtylrlvkindwteitqfi
lehrakgsckyalplrippsaclspqayqqgvtvdsigmlprfipenqrtvavyslkiag
whgpkapytstllppelsetpnatqpelapedpedsalledpvgthhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3u82A (A:)
pvldqltdppgvrrvyhiqaglpdpfqppslpitvyyavleracrsvllnapseapqivr
gasedvrkqpynltiawfrmggncaipitvmeytecsynkslgacpirtqprwnyydsfs
avsednlgflmhapafetagtylrlvkindwteitqfilehrakgsckyalplrippsac
lspqayqqgvtvdsigmlprfipenqrtvavyslkiagwhgpkapytstll

  • Chain 'B':
    No sequence available.