PDB entry 3u6y

View 3u6y on RCSB PDB site
Description: Crystal structure of ALBA2-DNA complex
Class: DNA binding protein/DNA
Keywords: ALBA 2, Archaea, DNA-Binding Protein, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, DNA Binding Protein-DNA complex
Deposited on 2011-10-13, released 2012-02-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA/RNA-binding protein Alba 2
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: albA2, APE_1823
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3u6ya_
  • Chain 'C':
    Compound: DNA/RNA-binding protein Alba 2
    Species: Aeropyrum pernix [TaxId:272557]
    Gene: albA2, APE_1823
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3u6yc_
  • Chain 'D':
    Compound: DNA (5'-d(*cp*cp*gp*gp*c)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'E':
    Compound: DNA (5'-d(*gp*gp*cp*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3u6yA (A:)
macegapevrigrkpvmnyvlailttlmeqgtnqvvvkargrninravdaveivrkrfak
nieikdikidsqeievqtpegqtrtrrvssieiclekagesa

    Sequence, based on observed residues (ATOM records): (download) 
    >3u6yA (A:)
macegapevrigrkpvmnyvlailttlmeqgtnqvvvkargrninravdaveivrkrfak
nieikdikidsqeievqtpegqtrtrrvssieiclekag

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3u6yC (C:)
macegapevrigrkpvmnyvlailttlmeqgtnqvvvkargrninravdaveivrkrfak
nieikdikidsqeievqtpegqtrtrrvssieiclekagesa

    Sequence, based on observed residues (ATOM records): (download) 
    >3u6yC (C:)
macegapevrigrkpvmnyvlailttlmeqgtnqvvvkargrninravdaveivrkrfak
nieikdikidsqeievqtpegqtrtrrvssieiclekag

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.