PDB entry 3to4

View 3to4 on RCSB PDB site
Description: Structure of mouse Valpha14Vbeta2-mouseCD1d-alpha-Galactosylceramide
Class: immune system
Keywords: mouse CD1d, mouse NKT, IMMUNE SYSTEM
Deposited on 2011-09-04, released 2011-12-14
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-12-14, with a file datestamp of 2011-12-09.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.22
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antigen-presenting glycoprotein CD1d1
    Species: Mus musculus [TaxId:10090]
    Gene: Cd1d1, Cd1.1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11609 (Start-278)
      • see remark 999 (200)
      • expression tag (279-298)
    Domains in SCOPe 2.06: d3to4a1, d3to4a2, d3to4a3
  • Chain 'B':
    Compound: beta-2 microglobulin
    Species: Mus musculus [TaxId:10090]
    Gene: B2m, RP23-34E24.5-001, mCG_11606
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3to4b_
  • Chain 'C':
    Compound: NKT Valpha14 (MOUSE VARIABLE DOMAIN, HUMAN CONSTANT DOMAIN)
    Species: Homo sapiens, Mus musculus [TaxId:9606, 10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TO4 (0-End)
    Domains in SCOPe 2.06: d3to4c1, d3to4c2
  • Chain 'D':
    Compound: NKT Vbeta2 (MOUSE VARIABLE DOMAIN, HUMAN CONSTANT DOMAIN)
    Species: Homo sapiens, Mus musculus [TaxId:9606, 10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3TO4
    Domains in SCOPe 2.06: d3to4d1, d3to4d2
  • Heterogens: AGH, NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3to4A (A:)
    seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
    qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
    qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
    sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
    adetwylqatldveageeaglacrvkhsslggqdiilywgslhhildaqkmvwnhrhhhh
    hh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3to4A (A:)
    ytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqweklq
    hmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemyasesflhvafqgkyvvrfwg
    tswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekpv
    awlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqat
    ldveageeaglacrvkhsslggqdiilywgslhhildaqkmvwnhrhhh
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3to4B (B:)
    iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
    sfyilahteftptetdtyacrvkhasmaepktvywdrdm
    

    Sequence, based on observed residues (ATOM records): (download)
    >3to4B (B:)
    qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
    fyilahteftptetdtyacrvkhasmaepktvywdrdm
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3to4C (C:)
    tqveqspqslvvrqgensvlqcnysvtpdnhlrwfkqdtgkglvsltvlvdqkdktsngr
    ysatldkdakhstlhitatllddtatyicvvgdrgsalgrlhfgagtqlivipdiqnpdp
    avyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavawsn
    ksdfacanafnnsiipedtffpspendgggck
    

    Sequence, based on observed residues (ATOM records): (download)
    >3to4C (C:)
    tqveqspqslvvrqgensvlqcnysvtpdnhlrwfkqdtgkglvsltvlvdqkdktsngr
    ysatldkdakhstlhitatllddtatyicvvgdrgsalgrlhfgagtqlivipdiqnpdp
    avyqlrdskssdksvclftdfdsqtvyitdktvldfksnsavawsnksdfacanafnnsi
    ipedtffpsp
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3to4D (D:)
    vtlleqnprwrlvprgqavnlrcilknsqypwmswyqqdlqkqlqwlftlrspgdkevks
    lpgadylatrvtdtelrlqvanmsqgrtlyctssadhwtntgqlyfgegskltvledlkn
    vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplke
    qpalndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaea
    wgradqdrgggcd
    

    Sequence, based on observed residues (ATOM records): (download)
    >3to4D (D:)
    lleqnprwrlvprgqavnlrcilknsqypwmswyqqdlqkqlqwlftlrspgdkevkslp
    gadylatrvtdtelrlqvanmsqgrtlyctssadhwtntgqlyfgegskltvledlknvf
    ppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeqp
    alndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
    rad