PDB entry 3t1d

View 3t1d on RCSB PDB site
Description: The mutant structure of human Siderocalin W79A, R81A, Y106F bound to Enterobactin
Class: antimicrobial protein
Keywords: SSGCID, Seattle Structural Genomics Center for Infectious Disease, beta-barrel, siderocalin, W79A, R81A, Y106F, ANTIMICROBIAL PROTEIN
Deposited on 2011-07-21, released 2011-08-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-02-27, with a file datestamp of 2019-02-22.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Homo sapiens [TaxId:9606]
    Gene: LCN2, HNL, NGAL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188
      • engineered mutation (98)
      • engineered mutation (100)
      • see remark 999 (106)
      • engineered mutation (125)
    Domains in SCOPe 2.08: d3t1da_
  • Chain 'B':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Homo sapiens [TaxId:9606]
    Gene: LCN2, HNL, NGAL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188 (Start-197)
      • engineered mutation (98)
      • engineered mutation (100)
      • see remark 999 (106)
      • engineered mutation (125)
    Domains in SCOPe 2.08: d3t1db_
  • Chain 'C':
    Compound: Neutrophil gelatinase-associated lipocalin
    Species: Homo sapiens [TaxId:9606]
    Gene: LCN2, HNL, NGAL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P80188
      • engineered mutation (98)
      • engineered mutation (100)
      • see remark 999 (106)
      • engineered mutation (125)
    Domains in SCOPe 2.08: d3t1dc_
  • Heterogens: GOL, CL, TD1, UNX, DBS, DBH, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3t1dA (A:)
mplgllwlglallgalhaqaqdstsdlipapplskvplqqnfqdnqfqgkwyvvglagna
ilredkdpqkmyatiyelkedksynvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksy
pgltsflvrvvstnynqhamvffkkvsqnreyfkitlygrtkeltselkenfirfskslg
lpenhivfpvpidqcidg

    Sequence, based on observed residues (ATOM records): (download) 
    >3t1dA (A:)
stsdlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelkedk
synvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksypgltsflvrvvstnynqhamvf
fkkvsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcid

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3t1dB (B:)
mplgllwlglallgalhaqaqdstsdlipapplskvplqqnfqdnqfqgkwyvvglagna
ilredkdpqkmyatiyelkedksynvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksy
pgltsflvrvvstnynqhamvffkkvsqnreyfkitlygrtkeltselkenfirfskslg
lpenhivfpvpidqcidg

    Sequence, based on observed residues (ATOM records): (download) 
    >3t1dB (B:)
sdlipapplskvplqqnfqdnqfqgkwyvvglagnailredkdpqkmyatiyelkedksy
nvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksypgltsflvrvvstnynqhamvffk
kvsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcidg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3t1dC (C:)
mplgllwlglallgalhaqaqdstsdlipapplskvplqqnfqdnqfqgkwyvvglagna
ilredkdpqkmyatiyelkedksynvtsvlfrkkkcdyaiatfvpgsqpgeftlgniksy
pgltsflvrvvstnynqhamvffkkvsqnreyfkitlygrtkeltselkenfirfskslg
lpenhivfpvpidqcidg

    Sequence, based on observed residues (ATOM records): (download) 
    >3t1dC (C:)
tsdlipapplskvplqqnfqdnqfqgkwyvvglagnailredpqkmyatiyelkedksyn
vtsvlfrkkkcdyaiatfvpgsqpgeftlgniksypgltsflvrvvstnynqhamvffkk
vsqnreyfkitlygrtkeltselkenfirfskslglpenhivfpvpidqcid