PDB entry 3sy5
View 3sy5 on RCSB PDB site
Description: Crystal structure of the mutant S127A of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with the inhibitor 6azaUMP
Class: lyase/inhibitor
Keywords: tim barrel, 6azaUMP, LYASE-INHIBITOR complex
Deposited on
2011-07-15, released
2011-09-21
The last revision prior to the SCOPe 2.07 freeze date was dated
2013-07-10, with a file datestamp of
2013-07-05.
Experiment type: XRAY
Resolution: 1.32 Å
R-factor: 0.197
AEROSPACI score: 0.71
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: orotidine 5'-phosphate decarboxylase
Species: Methanothermobacter thermautotrophicus str. Delta H [TaxId:187420]
Gene: pyrF, MTH_129
Database cross-references and differences (RAF-indexed):
- Uniprot O26232
- conflict (100)
- engineered mutation (126)
Domains in SCOPe 2.07: d3sy5a_ - Chain 'B':
Compound: orotidine 5'-phosphate decarboxylase
Species: Methanothermobacter thermautotrophicus str. Delta H [TaxId:187420]
Gene: pyrF, MTH_129
Database cross-references and differences (RAF-indexed):
- Uniprot O26232
- conflict (100)
- engineered mutation (126)
Domains in SCOPe 2.07: d3sy5b_ - Heterogens: UP6, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3sy5A (A:)
mrsrrvdvmdvmnrlilamdlmnrddalrvtgevreyidtvkigyplvlsegmdiiaefr
krfgcriiadfkvadipetnekicratfkagadaiivhgfpgadsvraclnvaeemgrev
flltemahpgaemfiqgaadeiarmgvdlgvknyvgpstrperlsrlreiigqdsflisp
gvgaqggdpgetlrfadaiivgrsiyladnpaaaaagiiesikdllnp
Sequence, based on observed residues (ATOM records): (download)
>3sy5A (A:)
dvmdvmnrlilamdlmnrddalrvtgevreyidtvkigyplvlsegmdiiaefrkrfgcr
iiadfkvadipetnekicratfkagadaiivhgfpgadsvraclnvaeemgrevflltem
ahpgaemfiqgaadeiarmgvdlgvknyvgpstrperlsrlreiigqdsflispgvgaqg
gdpgetlrfadaiivgrsiyladnpaaaaagiiesikdll
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3sy5B (B:)
mrsrrvdvmdvmnrlilamdlmnrddalrvtgevreyidtvkigyplvlsegmdiiaefr
krfgcriiadfkvadipetnekicratfkagadaiivhgfpgadsvraclnvaeemgrev
flltemahpgaemfiqgaadeiarmgvdlgvknyvgpstrperlsrlreiigqdsflisp
gvgaqggdpgetlrfadaiivgrsiyladnpaaaaagiiesikdllnp
Sequence, based on observed residues (ATOM records): (download)
>3sy5B (B:)
vmdvmnrlilamdlmnrddalrvtgevreyidtvkigyplvlsegmdiiaefrkrfgcri
iadfkvadipetnekicratfkagadaiivhgfpgadsvraclnvaeemgrevflltema
hpgaemfiqgaadeiarmgvdlgvknyvgpstrperlsrlreiigqdsflispgvgaqgg
dpgetlrfadaiivgrsiyladnpaaaaagiiesikdll