PDB entry 3slp

View 3slp on RCSB PDB site
Description: Crystal Structure of Lambda Exonuclease in Complex with a 12 BP Symmetric DNA Duplex
Class: hydrolase/DNA
Keywords: Type II Restriction Endonuclease Fold, 5'-3' dsDNA exonuclease, HYDROLASE-DNA complex
Deposited on 2011-06-24, released 2011-07-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-08-03, with a file datestamp of 2011-07-29.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.215
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Exonuclease
    Species: Enterobacteria phage lambda [TaxId:10710]
    Gene: exo, red-alpha, redX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3slpa_
  • Chain 'B':
    Compound: Exonuclease
    Species: Enterobacteria phage lambda [TaxId:10710]
    Gene: exo, red-alpha, redX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3slpb_
  • Chain 'C':
    Compound: Exonuclease
    Species: Enterobacteria phage lambda [TaxId:10710]
    Gene: exo, red-alpha, redX
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3slpc_
  • Chain 'D':
    Compound: 5'-d(*gp*cp*gp*ap*cp*tp*ap*gp*tp*cp*gp*c)-3'
  • Chain 'E':
    Compound: 5'-d(*gp*cp*gp*ap*cp*tp*ap*gp*tp*cp*gp*c)-3'
  • Heterogens: CA, PO4, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3slpA (A:)
gshmtpdiilqrtgidvraveqgddawhklrlgvitasevhnviakprsgkkwpdmkmsy
fhtllaevctgvapevnakalawgkqyendartlfeftsgvnvtespiiyrdesmrtacs
pdglcsdgnglelkcpftsrdfmkfrlggfeaiksaymaqvqysmwvtrknawyfanydp
rmkreglhyvvierdekymasfdeivpefiekmdealaeigfvfgeqwr

    Sequence, based on observed residues (ATOM records): (download) 
    >3slpA (A:)
mtpdiilqrtgidvraveqgddawhklrlgvitasevhnviakprsgkkwpdmkmsyfht
llaevctgvapevnakalawgkqyendartlfeftsgvnvtespiiyrdesmrtacspdg
lcsdgnglelkcpftsrdfmkfrlggfeaiksaymaqvqysmwvtrknawyfanydprmk
reglhyvvierdekymasfdeivpefiekmdealaeigfvfgeqwr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3slpB (B:)
gshmtpdiilqrtgidvraveqgddawhklrlgvitasevhnviakprsgkkwpdmkmsy
fhtllaevctgvapevnakalawgkqyendartlfeftsgvnvtespiiyrdesmrtacs
pdglcsdgnglelkcpftsrdfmkfrlggfeaiksaymaqvqysmwvtrknawyfanydp
rmkreglhyvvierdekymasfdeivpefiekmdealaeigfvfgeqwr

    Sequence, based on observed residues (ATOM records): (download) 
    >3slpB (B:)
mtpdiilqrtgidvraveqgddawhklrlgvitasevhnviakprsgkkwpdmkmsyfht
llaevctgvapevnakalawgkqyendartlfeftsgvnvtespiiyrdesmrtacspdg
lcsdgnglelkcpftsrdfmkfrlggfeaiksaymaqvqysmwvtrknawyfanydprmk
reglhyvvierdekymasfdeivpefiekmdealaeigfvfgeqwr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3slpC (C:)
gshmtpdiilqrtgidvraveqgddawhklrlgvitasevhnviakprsgkkwpdmkmsy
fhtllaevctgvapevnakalawgkqyendartlfeftsgvnvtespiiyrdesmrtacs
pdglcsdgnglelkcpftsrdfmkfrlggfeaiksaymaqvqysmwvtrknawyfanydp
rmkreglhyvvierdekymasfdeivpefiekmdealaeigfvfgeqwr

    Sequence, based on observed residues (ATOM records): (download) 
    >3slpC (C:)
mtpdiilqrtgidvraveqgddawhklrlgvitasevhnviakprsgkkwpdmkmsyfht
llaevctgvapevnakalawgkqyendartlfeftsgvnvtespiiyrdesmrtacspdg
lcsdgnglelkcpftsrdfmkfrlggfeaiksaymaqvqysmwvtrknawyfanydprmk
reglhyvvierdekymasfdeivpefiekmdealaeigfvfgeqwr

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.