PDB entry 3skj
View 3skj on RCSB PDB site
Description: Structural And Functional Characterization of an Agonistic Anti-Human EphA2 Monoclonal Antibody
Class: immune system
Keywords: Fab, receptor, Ig fold, ephrin receptor, antibody, antigen, extra-cellular, IMMUNE SYSTEM
Deposited on
2011-06-22, released
2011-08-31
The last revision prior to the SCOPe 2.03 freeze date was dated
2012-08-29, with a file datestamp of
2012-08-24.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.219
AEROSPACI score: 0.3
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'E':
Compound: Ephrin type-A receptor 2
Species: Homo sapiens [TaxId:9606]
Gene: EPHA2, ECK
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3skje_ - Chain 'F':
Compound: Ephrin type-A receptor 2
Species: Homo sapiens [TaxId:9606]
Gene: EPHA2, ECK
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: antibody, heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: antibody, heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: antibody, light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3skjl1, d3skjl2 - Chain 'M':
Compound: antibody, light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3skjm1, d3skjm2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3skjE (E:)
apehhhhhhdydipttenlyfqgamdaaqgkevvlldfaaaggelgwlthpygkgwdlmq
nimndmpiymysvcnvmsgdqdnwlrtnwvyrgeaerifielkftvrdcnsfpggassck
etfnlyyaesdldygtnfqkrlftkidtiapdeitvssdfearhvklnveersvgpltrk
gfylafqdigacvallsvrvyykkcp
Sequence, based on observed residues (ATOM records): (download)
>3skjE (E:)
qgkevvlldfaaaggelgwlthpygkgwdlmqnimndmpiymysvcnvmsgdqdnwlrtn
wvyrgeaerifielkftvrdcnsfpggasscketfnlyyaesdldygtnfqkrlftkidt
iapdeitvssdfearhvklnveersvgpltrkgfylafqdigacvallsvrvyykk
- Chain 'F':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>3skjL (L:)
diqmtqspsslsasvgdrvtitcrasqsistwlawyqqkpgkapklliykasnlhtgvps
rfsgsgsgtefsltisglqpddfatyycqqynsysrtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec
- Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)
>3skjM (M:)
diqmtqspsslsasvgdrvtitcrasqsistwlawyqqkpgkapklliykasnlhtgvps
rfsgsgsgtefsltisglqpddfatyycqqynsysrtfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec