PDB entry 3si9

View 3si9 on RCSB PDB site
Description: Crystal structure of Dihydrodipicolinate Synthase from Bartonella Henselae
Class: lyase
Keywords: Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, TIM Barrel, LYASE
Deposited on 2011-06-17, released 2011-06-29
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-06-29, with a file datestamp of 2011-06-24.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.186
AEROSPACI score: 0.43 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Bartonella henselae [TaxId:38323]
    Gene: dapA, BH05000
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6G468 (21-End)
      • expression tag (20)
    Domains in SCOPe 2.06: d3si9a1, d3si9a2
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Bartonella henselae [TaxId:38323]
    Gene: dapA, BH05000
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6G468 (21-End)
      • expression tag (20)
    Domains in SCOPe 2.06: d3si9b1, d3si9b2
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase
    Species: Bartonella henselae [TaxId:38323]
    Gene: dapA, BH05000
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6G468 (21-End)
      • expression tag (20)
    Domains in SCOPe 2.06: d3si9c1, d3si9c2
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase
    Species: Bartonella henselae [TaxId:38323]
    Gene: dapA, BH05000
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6G468 (21-End)
      • expression tag (20)
    Domains in SCOPe 2.06: d3si9d1, d3si9d2
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3si9A (A:)
mahhhhhhmgtleaqtqgpgsmlkgavtalitpfddngaidekafcnfvewqitqgingv
spvgttgesptltheehkriielcveqvakrvpvvagagsnstseavelakhaekagada
vlvvtpyynrpnqrglythfssiakaisipiiiynipsrsvidmavetmrdlcrdfknii
gvkdatgkieraseqrekcgkdfvqlsgddctalgfnahggvgcisvssnvapklcaqlh
aaclcsdyktalklndllmplnravfiepspagikyaaaklglcgtivrspivplsdttk
kiidealyhagllke

    Sequence, based on observed residues (ATOM records): (download) 
    >3si9A (A:)
smlkgavtalitpfddngaidekafcnfvewqitqgingvspvgttgesptltheehkri
ielcveqvakrvpvvagagsnstseavelakhaekagadavlvvtpyynrpnqrglythf
ssiakaisipiiiynipsrsvidmavetmrdlcrdfkniigvkdatgkieraseqrekcg
kdfvqlsgddctalgfnahggvgcisvssnvapklcaqlhaaclcsdyktalklndllmp
lnravfiepspagikyaaaklglcgtivrspivplsdttkkiidealyhagllk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3si9B (B:)
mahhhhhhmgtleaqtqgpgsmlkgavtalitpfddngaidekafcnfvewqitqgingv
spvgttgesptltheehkriielcveqvakrvpvvagagsnstseavelakhaekagada
vlvvtpyynrpnqrglythfssiakaisipiiiynipsrsvidmavetmrdlcrdfknii
gvkdatgkieraseqrekcgkdfvqlsgddctalgfnahggvgcisvssnvapklcaqlh
aaclcsdyktalklndllmplnravfiepspagikyaaaklglcgtivrspivplsdttk
kiidealyhagllke

    Sequence, based on observed residues (ATOM records): (download) 
    >3si9B (B:)
smlkgavtalitpfddngaidekafcnfvewqitqgingvspvgttgesptltheehkri
ielcveqvakrvpvvagagsnstseavelakhaekagadavlvvtpyynrpnqrglythf
ssiakaisipiiiynipsrsvidmavetmrdlcrdfkniigvkdatgkieraseqrekcg
kdfvqlsgddctalgfnahggvgcisvssnvapklcaqlhaaclcsdyktalklndllmp
lnravfiepspagikyaaaklglcgtivrspivplsdttkkiidealyhagll

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3si9C (C:)
mahhhhhhmgtleaqtqgpgsmlkgavtalitpfddngaidekafcnfvewqitqgingv
spvgttgesptltheehkriielcveqvakrvpvvagagsnstseavelakhaekagada
vlvvtpyynrpnqrglythfssiakaisipiiiynipsrsvidmavetmrdlcrdfknii
gvkdatgkieraseqrekcgkdfvqlsgddctalgfnahggvgcisvssnvapklcaqlh
aaclcsdyktalklndllmplnravfiepspagikyaaaklglcgtivrspivplsdttk
kiidealyhagllke

    Sequence, based on observed residues (ATOM records): (download) 
    >3si9C (C:)
smlkgavtalitpfddngaidekafcnfvewqitqgingvspvgttgesptltheehkri
ielcveqvakrvpvvagagsnstseavelakhaekagadavlvvtpyynrpnqrglythf
ssiakaisipiiiynipsrsvidmavetmrdlcrdfkniigvkdatgkieraseqrekcg
kdfvqlsgddctalgfnahggvgcisvssnvapklcaqlhaaclcsdyktalklndllmp
lnravfiepspagikyaaaklglcgtivrspivplsdttkkiidealyhagll

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3si9D (D:)
mahhhhhhmgtleaqtqgpgsmlkgavtalitpfddngaidekafcnfvewqitqgingv
spvgttgesptltheehkriielcveqvakrvpvvagagsnstseavelakhaekagada
vlvvtpyynrpnqrglythfssiakaisipiiiynipsrsvidmavetmrdlcrdfknii
gvkdatgkieraseqrekcgkdfvqlsgddctalgfnahggvgcisvssnvapklcaqlh
aaclcsdyktalklndllmplnravfiepspagikyaaaklglcgtivrspivplsdttk
kiidealyhagllke

    Sequence, based on observed residues (ATOM records): (download) 
    >3si9D (D:)
smlkgavtalitpfddngaidekafcnfvewqitqgingvspvgttgesptltheehkri
ielcveqvakrvpvvagagsnstseavelakhaekagadavlvvtpyynrpnqrglythf
ssiakaisipiiiynipsrsvidmavetmrdlcrdfkniigvkdatgkieraseqrekcg
kdfvqlsgddctalgfnahggvgcisvssnvapklcaqlhaaclcsdyktalklndllmp
lnravfiepspagikyaaaklglcgtivrspivplsdttkkiidealyhagllk