PDB entry 3sfd

View 3sfd on RCSB PDB site
Description: crystal structure of porcine mitochondrial respiratory complex II bound with oxaloacetate and pentachlorophenol
Class: oxidoreductase
Keywords: succinate, ubiquinone oxidoreductase, OXIDOREDUCTASE
Deposited on 2011-06-13, released 2011-09-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-09-07, with a file datestamp of 2011-09-02.
Experiment type: XRAY
Resolution: 2.61 Å
R-factor: 0.244
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3sfda1, d3sfda2, d3sfda3
  • Chain 'B':
    Compound: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3sfdb1, d3sfdb2
  • Chain 'C':
    Compound: Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3sfdc_
  • Chain 'D':
    Compound: Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial
    Species: Sus scrofa [TaxId:9823]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5GZW8 (Start-102)
      • see remark 999 (66)
    Domains in SCOPe 2.08: d3sfdd_
  • Heterogens: FAD, OAA, FES, SF4, F3S, HEM, PCI, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3sfdA (A:)
ssakvsdaistqypvvdhefdavvvgaggaglraafglseagfntacvtklfptrshtva
aqgginaalgnmeednwrwhfydtvkgsdwlgdqdaihymteqapasvvelenygmpfsr
tedgkiyqrafggqslkfgkggqahrcccvadrtghsllhtlygrslrydtsyfveyfal
dllmengecrgvialciedgsihrirarntvvatggygrtyfsctsahtstgdgtamvtr
aglpcqdlefvqfhptgiygagclitegcrgeggilinsqgerfmeryapvakdlasrdv
vsrsmtleiregrgcgpekdhvylqlhhlppeqlavrlpgisetamifagvdvtkepipv
lptvhynmggiptnykgqvlrhvngqdqvvpglyacgeaacasvhganrlganslldlvv
fgracalsiaescrpgdkvpsikpnageesvmnldklrfangtirtselrlsmqksmqsh
aavfrvgsvlqegcekilrlygdlqhlktfdrgmvwntdlvetlelqnlmlcalqtiyga
earkesrgaharedfkervdeydyskpiqgqqkkpfqehwrkhtlsyvdvktgkvsleyr
pvidktlneadcatvppairsy

    Sequence, based on observed residues (ATOM records): (download) 
    >3sfdA (A:)
stqypvvdhefdavvvgaggaglraafglseagfntacvtklfptrshtvaaqgginaal
gnmeednwrwhfydtvkgsdwlgdqdaihymteqapasvvelenygmpfsrtedgkiyqr
afggqslkfgkggqahrcccvadrtghsllhtlygrslrydtsyfveyfaldllmengec
rgvialciedgsihrirarntvvatggygrtyfsctsahtstgdgtamvtraglpcqdle
fvqfhptgiygagclitegcrgeggilinsqgerfmeryapvakdlasrdvvsrsmtlei
regrgcgpekdhvylqlhhlppeqlavrlpgisetamifagvdvtkepipvlptvhynmg
giptnykgqvlrhvngqdqvvpglyacgeaacasvhganrlganslldlvvfgracalsi
aescrpgdkvpsikpnageesvmnldklrfangtirtselrlsmqksmqshaavfrvgsv
lqegcekilrlygdlqhlktfdrgmvwntdlvetlelqnlmlcalqtiygaearkesrga
haredfkervdeydyskpiqgqqkkpfqehwrkhtlsyvdvktgkvsleyrpvidktlne
adcatvppairsy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3sfdB (B:)
aqtaaataprikkfaiyrwdpdktgdkphmqtyeidlnncgpmvldalikikneidstlt
frrscregicgscamninggntlactrridtnldkvskiyplphmyvikdlvpdlsnfya
qyksiepylkkkdesqegkqqylqsieerekldglyecilcaccstscpsywwngdkylg
pavlmqayrwmidsrddfteerlaklqdpfslyrchtimnctgtcpkglnpgkaiaeikk
mmatykekkasv

    Sequence, based on observed residues (ATOM records): (download) 
    >3sfdB (B:)
prikkfaiyrwdpdktgdkphmqtyeidlnncgpmvldalikikneidstltfrrscreg
icgscamninggntlactrridtnldkvskiyplphmyvikdlvpdlsnfyaqyksiepy
lkkkdesqegkqqylqsieerekldglyecilcaccstscpsywwngdkylgpavlmqay
rwmidsrddfteerlaklqdpfslyrchtimnctgtcpkglnpgkaiaeikkmmatyke

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3sfdC (C:)
lgttakeemerfwnknlgsnrplsphitiyrwslpmamsichrgtgialsagvslfglsa
lllpgnfeshlelvkslclgptliytakfgivfplmyhtwngirhliwdlgkgltipqlt
qsgvvvliltvlssvglaam

    Sequence, based on observed residues (ATOM records): (download) 
    >3sfdC (C:)
ttakeemerfwnknlgsnrplsphitiyrwslpmamsichrgtgialsagvslfglsall
lpgnfeshlelvkslclgptliytakfgivfplmyhtwngirhliwdlgkgltipqltqs
gvvvliltvlssvglaam

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3sfdD (D:)
asskaaslhwtgervvsvlllgllpaaylnpcsamdyslaaaltlhghwgigqvvtdyvr
gdalqkaakagllalsaftfaglcyfnyhdvgickavamlwkl

    Sequence, based on observed residues (ATOM records): (download) 
    >3sfdD (D:)
sskaaslhwtgervvsvlllgllpaaylnpcsamdyslaaaltlhghwgigqvvtdyvrg
dalqkaakagllalsaftfaglcyfnyhdvgickavamlwkl