PDB entry 3se8
View 3se8 on RCSB PDB site
Description: Crystal structure of broadly and potently neutralizing antibody VRC03 in complex with HIV-1 gp120
Class: viral protein/immune system
Keywords: hiv, gp120, antibody, vrc03, neutralization, vaccine, envelope glycoprotein, viral protein-immune system complex
Deposited on
2011-06-10, released
2011-08-10
The last revision prior to the SCOPe 2.04 freeze date was dated
2012-08-15, with a file datestamp of
2012-08-10.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.189
AEROSPACI score: 0.48
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'G':
Compound: HIV-1 Clade AE strain 93TH057 gp120
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: gp120
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Heavy chain of antibody VRC03
Species: Homo sapiens [TaxId:9606]
Gene: antibody VRC03 heavy chain
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Light chain of antibody VRC03
Species: Homo sapiens [TaxId:9606]
Gene: antibody VRC03 light chain
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3se8l1, d3se8l2 - Heterogens: NAG, SO4, EDO, TRS, HOH
PDB Chain Sequences:
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3se8L (L:)
eivltqspgilslspgetatlfckasqggnamtwyqkrrgqvprlliydtsrrasgvpdr
fvgsgsgtdffltinkldredfavyycqqfeffglgselevhrtvaapsvfifppsdeql
ksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlskad
yekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3se8L (L:)
eivltqspgilslspgetatlfckasqggnamtwyqkrrgqvprlliydtsrrasgvpdr
fvgsgsgtdffltinkldredfavyycqqfeffglgselevhrtvaapsvfifppsdeql
ksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlskad
yekhkvyacevthqglsspvtksfnrge