PDB entry 3sdy
View 3sdy on RCSB PDB site
Description: Crystal Structure of Broadly Neutralizing Antibody CR8020 Bound to the Influenza A H3 Hemagglutinin
Class: Viral Protein/Immune System
Keywords: Viral fusion protein, immunoglobulin, Virus attachment and entry, immune recognition, Viral Protein-Immune System complex
Deposited on
2011-06-09, released
2011-07-20
The last revision prior to the SCOPe 2.03 freeze date was dated
2012-01-11, with a file datestamp of
2012-01-06.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: 0.203
AEROSPACI score: 0.26
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin HA1 chain
Species: Influenza A virus [TaxId:506350]
Gene: HA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3sdya_ - Chain 'B':
Compound: Hemagglutinin HA2 chain
Species: Influenza A virus [TaxId:506350]
Gene: HA
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Antibody CR8020, Heavy Chain
Species: Homo sapiens [TaxId:9606]
Gene: Immunoglobulin heavy chain locus (IGH)
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Antibody CR8020, Light Chain
Species: Homo sapiens [TaxId:9606]
Gene: Immunoglobulin kappa chain locus (IGK)
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3sdyl1, d3sdyl2 - Heterogens: SO4
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3sdyA (A:)
adpgatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrildgidctl
idallgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlefitegft
wtgvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiwgvhhps
tnqeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpgdvlvin
sngnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnkitygacp
kyvkqntlklatgmrnvpekqtr
Sequence, based on observed residues (ATOM records): (download)
>3sdyA (A:)
pgatlclghhavpngtlvktitddqievtnatelvqssstgkicnnphrildgidctlid
allgdphcdvfqnetwdlfverskafsncypydvpdyaslrslvassgtlefitegftwt
gvtqnggsnackrgpgsgffsrlnwltksgstypvlnvtmpnndnfdklyiwgvhhpstn
qeqtslyvqasgrvtvstrrsqqtiipnigsrpwvrglssrisiywtivkpgdvlvinsn
gnliaprgyfkmrtgkssimrsdapidtcisecitpngsipndkpfqnvnkitygacpky
vkqntlklatgmrnvpekq
- Chain 'B':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3sdyL (L:)
qeivmtqspgtlslspgeratlscrasqsvsmnylawfqqkpgqaprlliygasrratgi
pdrisgsgsgtdftltisrlepadfavyycqqygtsprtfgqgakveikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3sdyL (L:)
eivmtqspgtlslspgeratlscrasqsvsmnylawfqqkpgqaprlliygasrratgip
drisgsgsgtdftltisrlepadfavyycqqygtsprtfgqgakveikrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec