PDB entry 3sda
View 3sda on RCSB PDB site
Description: Crystal structure of autoreactive-Valpha14-Vbeta6 NKT TCR in complex with CD1d-beta-galactosylceramide
Class: immune system
Keywords: CD1d, beta-linked antigen, Immunity, NKT, autoreactive, IMMUNE SYSTEM
Deposited on
2011-06-08, released
2011-10-05
The last revision prior to the SCOPe 2.02 freeze date was dated
2011-10-05, with a file datestamp of
2011-09-30.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.274
AEROSPACI score: 0.19
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1.1, Cd1d1
Database cross-references and differences (RAF-indexed):
- Uniprot P11609 (Start-278)
- see remark 999 (200)
- expression tag (279-294)
- Chain 'B':
Compound: Beta-2-microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3sdab_ - Chain 'C':
Compound: NKT TCR Valpha14 chain
Species: Mus musculus , Homo sapiens [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: NKT TCR autoreactive-Vbeta6 chain
Species: Mus musculus , Homo sapiens [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, GCY, GOL, HOH