PDB entry 3s7x

View 3s7x on RCSB PDB site
Description: Unassembled Washington University Polyomavirus VP1 Pentamer R198K Mutant
Class: viral protein
Keywords: jelly-roll fold, antiparallel beta sandwich, major capsid protein, viral protein
Deposited on 2011-05-27, released 2011-06-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-06-29, with a file datestamp of 2011-06-24.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.235
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein VP1
    Species: WU Polyomavirus [TaxId:440266]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5HBD5 (4-266)
      • expression tag (1-3)
      • engineered mutation (168)
    Domains in SCOPe 2.08: d3s7xa1, d3s7xa2
  • Chain 'B':
    Compound: Major capsid protein VP1
    Species: WU Polyomavirus [TaxId:440266]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5HBD5 (4-266)
      • expression tag (2-3)
      • engineered mutation (168)
    Domains in SCOPe 2.08: d3s7xb1, d3s7xb2
  • Chain 'C':
    Compound: Major capsid protein VP1
    Species: WU Polyomavirus [TaxId:440266]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5HBD5 (4-266)
      • expression tag (1-3)
      • engineered mutation (168)
    Domains in SCOPe 2.08: d3s7xc1, d3s7xc2
  • Chain 'D':
    Compound: Major capsid protein VP1
    Species: WU Polyomavirus [TaxId:440266]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5HBD5 (Start-266)
      • engineered mutation (168)
    Domains in SCOPe 2.08: d3s7xd_
  • Chain 'E':
    Compound: Major capsid protein VP1
    Species: WU Polyomavirus [TaxId:440266]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5HBD5
      • engineered mutation (168)
    Domains in SCOPe 2.08: d3s7xe_
  • Heterogens: CL, GOL, NA

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3s7xA (A:)
gshmggvdvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpda
dttvcyslsqvappdipnqvsecdmliwelyrmetevlvlpvlnagilttggvggiagpq
lyfwavggqpldvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysie
swvadpsrndncryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadl
lgvnknrvhtglsrffrlhfrqrrvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >3s7xA (A:)
shmggvdvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpdad
ttvcyslsqvappdipnecdmliwelyrmetevlvlpvlnagilttggvggiagpqlyfw
avggqpldvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysieswva
dpsrndncryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadllgvn
knrvhtglsrffrlhfrqrrvrn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3s7xB (B:)
gshmggvdvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpda
dttvcyslsqvappdipnqvsecdmliwelyrmetevlvlpvlnagilttggvggiagpq
lyfwavggqpldvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysie
swvadpsrndncryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadl
lgvnknrvhtglsrffrlhfrqrrvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >3s7xB (B:)
hmggvdvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpdadt
tvcyslsqvappdipecdmliwelyrmetevlvlpvlnagilttggvggiagpqlyfwav
ggqpldvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysieswvadp
srndncryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadllgvnkn
rvhtglsrffrlhfrqrrvrn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3s7xC (C:)
gshmggvdvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpda
dttvcyslsqvappdipnqvsecdmliwelyrmetevlvlpvlnagilttggvggiagpq
lyfwavggqpldvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysie
swvadpsrndncryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadl
lgvnknrvhtglsrffrlhfrqrrvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >3s7xC (C:)
shmggvdvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpdad
ttvcyslsqvappdipnecdmliwelyrmetevlvlpvlnagilttggvggiagpqlyfw
avggqpldvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysieswva
dpsrndncryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadllgvn
knrvhtglsrffrlhfrqrrvrn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3s7xD (D:)
gshmggvdvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpda
dttvcyslsqvappdipnqvsecdmliwelyrmetevlvlpvlnagilttggvggiagpq
lyfwavggqpldvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysie
swvadpsrndncryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadl
lgvnknrvhtglsrffrlhfrqrrvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >3s7xD (D:)
gvdvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpdadttvc
yslsqvappdipnsecdmliwelyrmetevlvlpvlnagilttggvggiagpqlyfwavg
gqpldvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysieswvadps
rndncryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadllgvnknr
vhtglsrffrlhfrqrrvrn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3s7xE (E:)
gshmggvdvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpda
dttvcyslsqvappdipnqvsecdmliwelyrmetevlvlpvlnagilttggvggiagpq
lyfwavggqpldvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysie
swvadpsrndncryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadl
lgvnknrvhtglsrffrlhfrqrrvrn

    Sequence, based on observed residues (ATOM records): (download) 
    >3s7xE (E:)
dvlaavplseetefkvelfvkpvignaegttphywsissplktaeaanvtpdadttvcys
lsqvappdipecdmliwelyrmetevlvlpvlnagilttggvggiagpqlyfwavggqpl
dvlglaptekykgpaqytvnpktngtvphvysssetpkarvtnekysieswvadpsrndn
cryfgrmvggaatppvvsfsnnstiplldengigilclqgrlyitcadllgvnknrvhtg
lsrffrlhfrqrrv