SCOPe 2.06: Structural Classification of Proteins

PDB entry 3rzo

View 3rzo on RCSB PDB site
Description: RNA Polymerase II Initiation Complex with a 4-nt RNA
Class: transcription/RNA/DNA
Keywords: RNA polymerase II, initiation complex, TRANSCRIPTION-RNA-DNA complex
Deposited on 2011-05-12, released 2011-08-10
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-09-14, with a file datestamp of 2011-09-09.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.191
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: DNA-directed RNA polymerase II subunit RPB1
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P04050
Domains in SCOPe 2.06: d3rzoa_
Chain 'B':
Compound: DNA-directed RNA polymerase II subunit RPB2
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P08518 (Start-1223)
Domains in SCOPe 2.06: d3rzob_
Chain 'C':
Compound: DNA-directed RNA polymerase II subunit RPB3
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P16370
Chain 'E':
Compound: DNA-directed RNA polymerases I, II, and III subunit RPABC1
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P20434 (Start-214)
Domains in SCOPe 2.06: d3rzoe1, d3rzoe2
Chain 'F':
Compound: DNA-directed RNA polymerases I, II, and III subunit RPABC2
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P20435 (Start-154)
Domains in SCOPe 2.06: d3rzof_
Chain 'H':
Compound: DNA-directed RNA polymerases I, II, and III subunit RPABC3
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P20436 (Start-145)
Domains in SCOPe 2.06: d3rzoh_
Chain 'I':
Compound: DNA-directed RNA polymerase II subunit RPB9
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P27999
Domains in SCOPe 2.06: d3rzoi1, d3rzoi2
Chain 'J':
Compound: DNA-directed RNA polymerases I, II, and III subunit RPABC5
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P22139 (0-End)
Domains in SCOPe 2.06: d3rzoj_
Chain 'K':
Compound: DNA-directed RNA polymerase II subunit RPB11
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P38902 (0-End)
Domains in SCOPe 2.06: d3rzok_
Chain 'L':
Compound: DNA-directed RNA polymerases I, II, and III subunit RPABC4
Species: Saccharomyces cerevisiae S288c [TaxId:559292]
Database cross-references and differences (RAF-indexed):
- Uniprot P40422 (Start-69)
Domains in SCOPe 2.06: d3rzol_
Chain 'R':
Compound: RNA (5'-r(*gp*ap*gp*g)-3')
Chain 'T':
Compound: DNA (5'-d(*cp*tp*ap*cp*cp*gp*ap*tp*ap*ap*gp*cp*ap*gp*ap*cp*gp*ap*tp*cp*cp*tp*cp*tp*cp*gp*ap*tp*g)-3')
Heterogens: ZN

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>3rzoA (A:)
mvgqqyssaplrtvkevqfglfspeevraisvakirfpetmdetqtrakigglndprlgs
idrnlkcqtcqegmnecpghfghidlakpvfhvgfiakikkvcecvcmhcgkllldehne
lmrqalaikdskkrfaaiwtlcktkmvcetdvpseddptqlvsrggcgntqptirkdglk
lvgswkkdratgdadepelrvlsteeilnifkhisvkdftslgfnevfsrpewmiltclp
vppppvrpsisfnesqrgeddltfkladilkanisletlehngaphhaieeaesllqfhv
atymdndiagqpqalqksgrpvksirarlkgkegrirgnlmgkrvdfsartvisgdpnle
ldqvgvpksiaktltypevvtpynidrltqlvrngpnehpgakyvirdsgdridlryskr
agdiqlqygwkverhimdndpvlfnrqpslhkmsmmahrvkvipystfrlnlsvtspyna
dfdgdemnlhvpqseetraelsqlcavplqivspqsnkpcmgivqdtlcgirkltlrdtf
ieldqvlnmlywvpdwdgviptpaiikpkplwsgkqilsvaipngihlqrfdegttllsp
kdngmliidgqiifgvvekktvgssngglihvvtrekgpqvcaklfgniqkvvnfwllhn
gfstgigdtiadgptmreitetiaeakkkvldvtkeaqanlltakhgmtlresfednvvr
flneardkagrlaevnlkdlnnvkqmvmagskgsfiniaqmsacvgqqsvegkriafgfv
drtlphfskddyspeskgfvensylrgltpqefffhamggreglidtavktaetgyiqrr
lvkaledimvhydnttrnslgnviqfiygedgmdaahiekqsldtiggsdaafekryrvd
llntdhtldpsllesgseilgdlklqvlldeeykqlvkdrkflrevfvdgeanwplpvni
rriiqnaqqtfhidhtkpsdltikdivlgvkdlqenllvlrgkneiiqnaqrdavtlfcc
llrsrlatrrvlqeyrltkqafdwvlsnieaqflrsvvhpgemvgvlaaqsigepatqmt
lntfhfagvaskkvtsgvprlkeilnvaknmktpsltvylepghaadqeqaklirsaieh
ttlksvtiaseiyydpdprstvipedeeiiqlhfslldeeaeqsfdqqspwllrleldra
amndkdltmgqvgerikqtfkndlfviwsedndekliircrvvrpksldaeteaeedhml
kkientmlenitlrgveniervvmmkydrkvpsptgeyvkepewvletdgvnlsevmtvp
gidptriytnsfidimevlgieagraalykevynviasdgsyvnyrhmallvdvmttqgg
ltsvtrhgfnrsntgalmrcsfeetveilfeagasaelddcrgvsenvilgqmapigtga
fdvmideeslvkympeqkiteiedgqdggvtpysnesglvnadldvkdelmfsplvdsgs
ndamaggftayggadygeatspfgaygeaptspgfgvsspgfsptsptysptspayspts
psysptspsysptspsysptspsysptspsysptspsysptspsysptspsysptspsys
ptspsysptspsysptspsysptspsysptspsysptspaysptspsysptspsysptsp
sysptspsysptspnysptspsysptspgyspgspayspkqdeqkhnenensr