PDB entry 3ryf

View 3ryf on RCSB PDB site
Description: GTP-Tubulin: RB3 Stathmin-like domain complex
Class: cell cycle
Keywords: alpha-tubulin, beta-tubulin, GTP, gtpase, microtubule, stathmin s-tubulin, subtilisin, tubulin, cell cycle
Deposited on 2011-05-11, released 2011-10-05
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-10-05, with a file datestamp of 2011-09-30.
Experiment type: XRAY
Resolution: 2.52 Å
R-factor: 0.17
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tubulin alpha chain
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VWZ0 (0-End)
      • see remark 999 (231)
      • see remark 999 (339)
    Domains in SCOPe 2.03: d3ryfa1, d3ryfa2
  • Chain 'B':
    Compound: Tubulin beta chain
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VWY9 (0-End)
      • see remark 999 (314-315)
      • see remark 999 (332)
      • see remark 999 (364)
    Domains in SCOPe 2.03: d3ryfb1, d3ryfb2
  • Chain 'C':
    Compound: Tubulin alpha chain
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VWZ0 (0-End)
      • see remark 999 (231)
      • see remark 999 (339)
    Domains in SCOPe 2.03: d3ryfc1, d3ryfc2
  • Chain 'D':
    Compound: Tubulin beta chain
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • Uniprot D0VWY9 (0-End)
      • see remark 999 (314-315)
      • see remark 999 (332)
      • see remark 999 (364)
    Domains in SCOPe 2.03: d3ryfd1, d3ryfd2
  • Chain 'E':
    Compound: Stathmin-4
    Species: Rattus norvegicus [TaxId:10116]
    Gene: STMN4
    Database cross-references and differences (RAF-indexed):
    • Uniprot P63043 (1-141)
      • see remark 999 (0)
      • engineered mutation (10)
      • engineered mutation (16)
    Domains in SCOPe 2.03: d3ryfe_
  • Heterogens: GTP, MG, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ryfA (A:)
    mrecisihvgqagvqignacwelyclehgiqpdgqmpsdktigggddsfntffsetgagk
    hvpravfvdleptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvld
    rirkladqctglqgflvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvsta
    vvepynsiltthttlehsdcafmvdneaiydicrrnldierptytnlnrlisqivssita
    slrfdgalnvdltefqtnlvpyprihfplatyapvisaekayheqlsvaeitnacfepan
    qmvkcdprhgkymaccllyrgdvvpkdvnaaiatiktkrsiqfvdwcptgfkvginyqpp
    tvvpggdlakvqravcmlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefse
    aredmaalekdyeevgvdsvegegeeegeey
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ryfA (A:)
    mrecisihvgqagvqignacwelyclehgiqpdgqmpsdktgddsfntffsetgagkhvp
    ravfvdleptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvldrir
    kladqctglqgflvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvstavve
    pynsiltthttlehsdcafmvdneaiydicrrnldierptytnlnrlisqivssitaslr
    fdgalnvdltefqtnlvpyprihfplatyapvisaekayheqlsvaeitnacfepanqmv
    kcdprhgkymaccllyrgdvvpkdvnaaiatiktkrsiqfvdwcptgfkvginyqpptvv
    pggdlakvqravcmlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefseare
    dmaalekdyeevgvd
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ryfB (B:)
    mreivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneatgnkyv
    prailvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvv
    rkesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvmpspkvsdtvv
    epynatlsvhqlventdetysidnealydicfrtlklttptygdlnhlvsatmsgvttcl
    rfpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdsknmm
    aacdprhgryltvatifrgrmsmkevdeqmlniqnknssyfvewipnnvktavcdipprg
    lkmsstfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvs
    eyqqyqdatadeqgefeeeegedea
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ryfB (B:)
    mreivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneatgnkyv
    prailvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvv
    rkesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvmpspkvsdtvv
    epynatlsvhqlventdetysidnealydicfrtlklttptygdlnhlvsatmsgvttcl
    rfpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdsknmm
    aacdprhgryltvatifrgrmsmkevdeqmlniqnknssyfvewipnnvktavcdipprg
    lkmsstfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvs
    eyqqyqdatade
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ryfC (C:)
    mrecisihvgqagvqignacwelyclehgiqpdgqmpsdktigggddsfntffsetgagk
    hvpravfvdleptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvld
    rirkladqctglqgflvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvsta
    vvepynsiltthttlehsdcafmvdneaiydicrrnldierptytnlnrlisqivssita
    slrfdgalnvdltefqtnlvpyprihfplatyapvisaekayheqlsvaeitnacfepan
    qmvkcdprhgkymaccllyrgdvvpkdvnaaiatiktkrsiqfvdwcptgfkvginyqpp
    tvvpggdlakvqravcmlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefse
    aredmaalekdyeevgvdsvegegeeegeey
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ryfC (C:)
    mrecisihvgqagvqignacwelyclehgiqpdgqmpddsfntffsetgagkhvpravfv
    dleptvidevrtgtyrqlfhpeqlitgkedaannyarghytigkeiidlvldrirkladq
    ctglqgflvfhsfgggtgsgftsllmerlsvdygkksklefsiypapqvstavvepynsi
    ltthttlehsdcafmvdneaiydicrrnldierptytnlnrlisqivssitaslrfdgal
    nvdltefqtnlvpyprihfplatyapvisaekayheqlsvaeitnacfepanqmvkcdpr
    hgkymaccllyrgdvvpkdvnaaiatiktkrsiqfvdwcptgfkvginyqpptvvpggdl
    akvqravcmlsnttaiaeawarldhkfdlmyakrafvhwyvgegmeegefsearedmaal
    ekdyeevgvds
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ryfD (D:)
    mreivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneatgnkyv
    prailvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvv
    rkesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvmpspkvsdtvv
    epynatlsvhqlventdetysidnealydicfrtlklttptygdlnhlvsatmsgvttcl
    rfpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdsknmm
    aacdprhgryltvatifrgrmsmkevdeqmlniqnknssyfvewipnnvktavcdipprg
    lkmsstfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvs
    eyqqyqdatadeqgefeeeegedea
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ryfD (D:)
    mreivhiqagqcgnqigakfwevisdehgidptgsyhgdsdlqlerinvyyneatgnkyv
    prailvdlepgtmdsvrsgpfgqifrpdnfvfgqsgagnnwakghytegaelvdsvldvv
    rkesescdclqgfqlthslgggtgsgmgtlliskireeypdrimntfsvmpspkvsdtvv
    epynatlsvhqlventdetysidnealydicfrtlklttptygdlnhlvsatmsgvttcl
    rfpgqlnadlrklavnmvpfprlhffmpgfapltsrgsqqyraltvpeltqqmfdsknmm
    aacdprhgryltvatifrgrmsmkevdeqmlniqnknssyfvewipnnvktavcdipprg
    lkmsstfignstaiqelfkriseqftamfrrkaflhwytgegmdemefteaesnmndlvs
    eyqqyqdatad
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3ryfE (E:)
    admevielnkatsgqswevilkppsfdgvpefnaslprrrdpsleeiqkkleaaeerrky
    qeaellkhlaekrehereviqkaieennnfikmakeklaqkmesnkenreahlaamlerl
    qekdkhaeevrknkelkeeasr
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ryfE (E:)
    admevielnkatsgqswevilkppsfdgvperrrdpsleeiqkkleaaeerrkyqeaell
    khlaekrehereviqkaieennnfikmakeklaqkmesnkenreahlaamlerlqekdkh
    aeevrknkelkeeasr