PDB entry 3rul

View 3rul on RCSB PDB site
Description: New strategy to analyze structures of glycopeptide-target complexes
Class: Signaling Protein/Antibiotic
Keywords: antibiotic, glycopeptide, native protein ligation, fusion, carboxymethylation of cysteine, dalbavancin, Signaling Protein-Antibiotic complex
Deposited on 2011-05-05, released 2012-06-06
The last revision prior to the SCOPe 2.02 freeze date was dated 2012-06-06, with a file datestamp of 2012-06-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.244
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBC
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG48 (0-74)
    • see remark 999 (75-78)
  Domains in SCOPe 2.02: d3rula_
• Chain 'B':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBC
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG48 (0-74)
    • see remark 999 (75-78)
  Domains in SCOPe 2.02: d3rulb_
• Chain 'C':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBC
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG48 (0-74)
    • see remark 999 (75-78)
  Domains in SCOPe 2.02: d3rulc_
• Chain 'D':
  Compound: Ubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBC
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CG48 (0-74)
    • see remark 999 (75-78)
• Chain 'E':
  Compound: Dalbavancin
  Database cross-references and differences (RAF-indexed):
  • PDB 3RUL (0-6)
• Chain 'F':
  Compound: Dalbavancin
  Database cross-references and differences (RAF-indexed):
  • PDB 3RUL (0-6)
• Chain 'G':
  Compound: Dalbavancin
  Database cross-references and differences (RAF-indexed):
  • PDB 3RUL (0-6)
• Chain 'H':
  Compound: Dalbavancin
  Database cross-references and differences (RAF-indexed):
  • PDB 3RUL (0-6)
• Heterogens: TLA, CL, N1L, MAN, M12, HOH

PDB Chain Sequences:

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3rulA (A:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgckaa
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3rulB (B:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgckaa
  

  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3rulC (C:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgckaa
  

  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.