PDB entry 3rug
View 3rug on RCSB PDB site
Description: Crystal structure of Valpha10-Vbeta8.1 NKT TCR in complex with CD1d-alphaglucosylceramide (C20:2)
Class: immune system
Keywords: mouse CD1d, mouse NKT, IMMUNE SYSTEM
Deposited on
2011-05-05, released
2011-08-03
The last revision prior to the SCOPe 2.02 freeze date was dated
2011-08-03, with a file datestamp of
2011-07-29.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.212
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1d1
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1d1
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3rugd_ - Chain 'E':
Compound: Valpha10(mouse variable domain, human constant domain)
Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Vbeta8.1(mouse variable domain, human constant domain)
Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: Valpha10(mouse variable domain, human constant domain)
Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Vbeta8.1(mouse variable domain, human constant domain)
Species: Mus musculus, Homo sapiens [TaxId:10090, 9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: DB6, NAG, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3rugD (D:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3rugD (D:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.