PDB entry 3rtj

View 3rtj on RCSB PDB site
Description: Crystal structure of ricin bound with dinucleotide ApG
Class: hydrolase/RNA
Keywords: enzyme-substrate complex, glycosidase ribosome-inactivating protein lectin glycoprotein, lactose binding, glycosylation, HYDROLASE, HYDROLASE-RNA complex
Deposited on 2011-05-03, released 2011-08-31
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-08-31, with a file datestamp of 2011-08-26.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.198
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ricin a chain
    Species: Ricinus communis [TaxId:3988]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3rtja_
  • Chain 'B':
    Compound: Ricin B chain
    Species: Ricinus communis [TaxId:3988]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3rtjb1, d3rtjb2
  • Chain 'D':
    Compound: RNA (5'-r(*ap*g)-3')

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3rtjA (A:)
ifpkqypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilv
elsnhaelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafg
gnydrleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaar
fqyiegemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskf
svydvsilipiialmvyrcapppssqf

    Sequence, based on observed residues (ATOM records): (download) 
    >3rtjA (A:)
qypiinfttagatvqsytnfiravrgrlttgadvrheipvlpnrvglpinqrfilvelsn
haelsvtlaldvtnayvvgyragnsayffhpdnqedaeaithlftdvqnrytfafggnyd
rleqlagnlrenielgngpleeaisalyyystggtqlptlarsfiiciqmiseaarfqyi
egemrtrirynrrsapdpsvitlenswgrlstaiqesnqgafaspiqlqrrngskfsvyd
vsilipiialmvyrcapp

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3rtjB (B:)
advcmdpepivrivgrnglcvdvrdgrfhngnaiqlwpcksntdanqlwtlkrdntirsn
gkclttygyspgvyvmiydcntaatdatrwqiwdngtiinprsslvlaatsgnsgttltv
qtniyavsqgwlptnntqpfvttivglyglclqansgqvwiedcssekaeqqwalyadgs
irpqqnrdncltsdsniretvvkilscgpassgqrwmfkndgtilnlysglvldvrasdp
slkqiilyplhgdpnqiwlplf

  • Chain 'D':
    No sequence available.