PDB entry 3ro0

View 3ro0 on RCSB PDB site
Description: Crystal structure of Bacillus amyloliquefaciens pyroglutamyl peptidase I and terpyridine platinum(II)
Class: hydrolase/hydrolase inhibitor
Keywords: HYDROLASE-HYDROLASE INHIBITOR complex
Deposited on 2011-04-25, released 2011-10-05
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-10-05, with a file datestamp of 2011-09-30.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.179
AEROSPACI score: 0.63 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Pyrrolidone-carboxylate peptidase
    Species: Bacillus amyloliquefaciens [TaxId:1390]
    Gene: PCP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P46107
      • engineered mutation (57)
      • engineered mutation (201)
    Domains in SCOPe 2.07: d3ro0a_
  • Chain 'B':
    Compound: Pyrrolidone-carboxylate peptidase
    Species: Bacillus amyloliquefaciens [TaxId:1390]
    Gene: PCP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P46107 (0-End)
      • engineered mutation (57)
      • engineered mutation (201)
    Domains in SCOPe 2.07: d3ro0b_
  • Chain 'C':
    Compound: Pyrrolidone-carboxylate peptidase
    Species: Bacillus amyloliquefaciens [TaxId:1390]
    Gene: PCP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P46107 (0-End)
      • engineered mutation (57)
      • engineered mutation (201)
    Domains in SCOPe 2.07: d3ro0c_
  • Chain 'D':
    Compound: Pyrrolidone-carboxylate peptidase
    Species: Bacillus amyloliquefaciens [TaxId:1390]
    Gene: PCP
    Database cross-references and differences (RAF-indexed):
    • Uniprot P46107
      • engineered mutation (57)
      • engineered mutation (201)
    Domains in SCOPe 2.07: d3ro0d_
  • Heterogens: TPT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ro0A (A:)
    mekkvlltgfdpfggetvnpsweavkrlngaaegpasivseqvptvfykslavlreamkk
    hqpdiiicvgqaggrmqitpervainlnearipdnegnqpvgedisqggpaaywtglpik
    riveeikkegipaavsytagtfvcnhlfyglmdeisrhhphirggfihipyipeqtlqks
    apslsldhitkalkiaavtaaaheddietgggelhlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ro0A (A:)
    ekkvlltgfdpfggetvnpsweavkrlngaaegpasivseqvptvfykslavlreamkkh
    qpdiiicvgqaggrmqitpervainlnearipdnegnqpvgedisqggpaaywtglpikr
    iveeikkegipaavsytagtfvcnhlfyglmdeisrhhphirggfihipyipeqtlqksa
    pslsldhitkalkiaavtaaaheddie
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ro0B (B:)
    mekkvlltgfdpfggetvnpsweavkrlngaaegpasivseqvptvfykslavlreamkk
    hqpdiiicvgqaggrmqitpervainlnearipdnegnqpvgedisqggpaaywtglpik
    riveeikkegipaavsytagtfvcnhlfyglmdeisrhhphirggfihipyipeqtlqks
    apslsldhitkalkiaavtaaaheddietgggelhlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ro0B (B:)
    mekkvlltgfdpfggetvnpsweavkrlngaaegpasivseqvptvfykslavlreamkk
    hqpdiiicvgqaggrmqitpervainlnearipdnegnqpvgedisqggpaaywtglpik
    riveeikkegipaavsytagtfvcnhlfyglmdeisrhhphirggfihipyipeqtlqks
    apslsldhitkalkiaavtaaaheddiet
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ro0C (C:)
    mekkvlltgfdpfggetvnpsweavkrlngaaegpasivseqvptvfykslavlreamkk
    hqpdiiicvgqaggrmqitpervainlnearipdnegnqpvgedisqggpaaywtglpik
    riveeikkegipaavsytagtfvcnhlfyglmdeisrhhphirggfihipyipeqtlqks
    apslsldhitkalkiaavtaaaheddietgggelhlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ro0C (C:)
    mekkvlltgfdpfggetvnpsweavkrlngaaegpasivseqvptvfykslavlreamkk
    hqpdiiicvgqaggrmqitpervainlnearipdnegnqpvgedisqggpaaywtglpik
    riveeikkegipaavsytagtfvcnhlfyglmdeisrhhphirggfihipyipeqtlqks
    apslsldhitkalkiaavtaaaheddi
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ro0D (D:)
    mekkvlltgfdpfggetvnpsweavkrlngaaegpasivseqvptvfykslavlreamkk
    hqpdiiicvgqaggrmqitpervainlnearipdnegnqpvgedisqggpaaywtglpik
    riveeikkegipaavsytagtfvcnhlfyglmdeisrhhphirggfihipyipeqtlqks
    apslsldhitkalkiaavtaaaheddietgggelhlehhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ro0D (D:)
    ekkvlltgfdpfggetvnpsweavkrlngaaegpasivseqvptvfykslavlreamkkh
    qpdiiicvgqaggrmqitpervainlnearipdnegnqpvgedisqggpaaywtglpikr
    iveeikkegipaavsytagtfvcnhlfyglmdeisrhhphirggfihipyipeqtlqksa
    pslsldhitkalkiaavtaaaheddi