PDB entry 3rkr

View 3rkr on RCSB PDB site
Description: Crystal structure of a metagenomic short-chain oxidoreductase (SDR) in complex with NADP
Class: oxidoreductase
Keywords: Rossmann fold, OXIDOREDUCTASE
Deposited on 2011-04-18, released 2011-11-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-03-28, with a file datestamp of 2012-03-23.
Experiment type: XRAY
Resolution: 2.42 Å
R-factor: 0.194
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Short chain oxidoreductase
    Species: uncultured bacterium Bio5 [TaxId:460938]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3rkra_
  • Chain 'B':
    Compound: Short chain oxidoreductase
    Species: uncultured bacterium Bio5 [TaxId:460938]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3rkrb_
  • Chain 'C':
    Compound: Short chain oxidoreductase
    Species: uncultured bacterium Bio5 [TaxId:460938]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3rkrc_
  • Chain 'D':
    Compound: Short chain oxidoreductase
    Species: uncultured bacterium Bio5 [TaxId:460938]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3rkrd_
  • Heterogens: NAP, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3rkrA (A:)
mghhhhhhhhhhssghiddddkhmsslsgqvavvtgasrgigaaiarklgslgarvvlta
rdveklravereivaaggeaeshacdlshsdaiaafatgvlaahgrcdvlvnnagvgwfg
gplhtmkpaewdaliavnlkapylllrafapamiaakrghiinisslagknpvadgaayt
askwglnglmtsaaeelrqhqvrvslvapgsvrtefgvglsakksalgaiepddiadvva
llatqadqsfisevlvrptlkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3rkrA (A:)
sslsgqvavvtgasrgigaaiarklgslgarvvltardveklravereivaaggeaesha
cdlshsdaiaafatgvlaahgrcdvlvnnagvgwfggplhtmkpaewdaliavnlkapyl
llrafapamiaakrghiinisslagknpvadgaaytaskwglnglmtsaaeelrqhqvrv
slvapgsvaiepddiadvvallatqadqsfisevlvrptlk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3rkrB (B:)
mghhhhhhhhhhssghiddddkhmsslsgqvavvtgasrgigaaiarklgslgarvvlta
rdveklravereivaaggeaeshacdlshsdaiaafatgvlaahgrcdvlvnnagvgwfg
gplhtmkpaewdaliavnlkapylllrafapamiaakrghiinisslagknpvadgaayt
askwglnglmtsaaeelrqhqvrvslvapgsvrtefgvglsakksalgaiepddiadvva
llatqadqsfisevlvrptlkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3rkrB (B:)
sslsgqvavvtgasrgigaaiarklgslgarvvltardveklravereivaaggeaesha
cdlshsdaiaafatgvlaahgrcdvlvnnagvgwfggplhtmkpaewdaliavnlkapyl
llrafapamiaakrghiinisslagknpvadgaaytaskwglnglmtsaaeelrqhqvrv
slvapgsvraiepddiadvvallatqadqsfisevlvrptl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3rkrC (C:)
mghhhhhhhhhhssghiddddkhmsslsgqvavvtgasrgigaaiarklgslgarvvlta
rdveklravereivaaggeaeshacdlshsdaiaafatgvlaahgrcdvlvnnagvgwfg
gplhtmkpaewdaliavnlkapylllrafapamiaakrghiinisslagknpvadgaayt
askwglnglmtsaaeelrqhqvrvslvapgsvrtefgvglsakksalgaiepddiadvva
llatqadqsfisevlvrptlkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3rkrC (C:)
sslsgqvavvtgasrgigaaiarklgslgarvvltardveklravereivaaggeaesha
cdlshsdaiaafatgvlaahgrcdvlvnnagvgwfggplhtmkpaewdaliavnlkapyl
llrafapamiaakrghiinisslagknpvadgaaytaskwglnglmtsaaeelrqhqvrv
slvapgsvralgaiepddiadvvallatqadqsfisevlvrptl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3rkrD (D:)
mghhhhhhhhhhssghiddddkhmsslsgqvavvtgasrgigaaiarklgslgarvvlta
rdveklravereivaaggeaeshacdlshsdaiaafatgvlaahgrcdvlvnnagvgwfg
gplhtmkpaewdaliavnlkapylllrafapamiaakrghiinisslagknpvadgaayt
askwglnglmtsaaeelrqhqvrvslvapgsvrtefgvglsakksalgaiepddiadvva
llatqadqsfisevlvrptlkk

    Sequence, based on observed residues (ATOM records): (download) 
    >3rkrD (D:)
sslsgqvavvtgasrgigaaiarklgslgarvvltardveklravereivaaggeaesha
cdlshsdaiaafatgvlaahgrcdvlvnnagvgwfggplhtmkpaewdaliavnlkapyl
llrafapamiaakrghiinisslagknpvadgaaytaskwglnglmtsaaeelrqhqvrv
slvapgsvraiepddiadvvallatqadqsfisevlvrptlk