PDB entry 3rfz

View 3rfz on RCSB PDB site
Description: Crystal structure of the FimD usher bound to its cognate FimC:FimH substrate
Class: cell adhesion/transport/chaperone
Keywords: beta-barrel, pilus assembly, outer-membrane, CELL ADHESION-TRANSPORT PROTEIN-CHAPERONE complex, CELL ADHESION-TRANSPORT-CHAPERONE complex
Deposited on 2011-04-07, released 2011-06-01
The last revision prior to the SCOPe 2.03 freeze date was dated 2012-03-28, with a file datestamp of 2012-03-23.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.226
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type 1 fimbrial adhesin
    Species: Escherichia coli [TaxId:562]
    Gene: b4320, fimH, JW4283
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3rfza1, d3rfza2
  • Chain 'B':
    Compound: Outer membrane usher protein, type 1 fimbrial synthesis
    Species: Escherichia coli [TaxId:562]
    Gene: fimD, ECB_04186
    Database cross-references and differences (RAF-indexed):
    • Uniprot C6UL88 (Start-832)
      • expression tag (833)
  • Chain 'C':
    Compound: chaperone protein fimc
    Species: Escherichia coli [TaxId:562]
    Gene: fimC, c5395
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3rfzc1, d3rfzc2
  • Chain 'D':
    Compound: Type 1 fimbrial adhesin
    Species: Escherichia coli [TaxId:562]
    Gene: b4320, fimH, JW4283
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Outer membrane usher protein, type 1 fimbrial synthesis
    Species: Escherichia coli [TaxId:562]
    Gene: fimD, ECB_04186
    Database cross-references and differences (RAF-indexed):
    • Uniprot C6UL88 (Start-832)
      • expression tag (833)
  • Chain 'F':
    Compound: chaperone protein fimc
    Species: Escherichia coli [TaxId:562]
    Gene: fimC, c5395
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3rfzf1, d3rfzf2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3rfzA (A:)
facktangtaipigggsanvyvnlapvvnvgqnlvvdlstqifchndypetitdyvtlqr
gsayggvlsnfsgtvkysgssypfpttsetprvvynsrtdkpwpvalyltpvssaggvai
kagsliavlilrqtnnynsddfqfvwniyanndvvvptggcdvsardvtvtlpdyrgsvp
ipltvycaksqnlgyylsgthadagnsiftntasfspaqgvgvqltrngtiipanntvsl
gavgtsavslgltanyartggqvtagnvqsiigvtfvyq

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3rfzC (C:)
gvalgatrviypagqkqvqlavtnndenstyliqswvenadgvkdgrfivtpplfamkgk
kentlrildatnnqlpqdreslfwmnvkaipsmdkskltentlqlaiisriklyyrpakl
alppdqaaeklrfrrsansltlinptpyyltvtelnagtrvlenalvppmgesavklpsd
agsnityrtindygaltpkmtgvmehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3rfzC (C:)
gvalgatrviypagqkqvqlavtnndenstyliqswvenadgvkdgrfivtpplfamkgk
kentlrildatnnqlpqdreslfwmnvkaipsmdkskltentlqlaiisriklyyrpakl
alppdqaaeklrfrrsansltlinptpyyltvtelnagtrvlenalvppmgesavklpsn
ityrtindygaltpkmtgvme

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3rfzF (F:)
gvalgatrviypagqkqvqlavtnndenstyliqswvenadgvkdgrfivtpplfamkgk
kentlrildatnnqlpqdreslfwmnvkaipsmdkskltentlqlaiisriklyyrpakl
alppdqaaeklrfrrsansltlinptpyyltvtelnagtrvlenalvppmgesavklpsd
agsnityrtindygaltpkmtgvmehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3rfzF (F:)
gvalgatrviypagqkqvqlavtnndenstyliqswvenadgvkdgrfivtpplfamkgk
kentlrildatnnqlpqdreslfwmnvkaipsmdkskltentlqlaiisriklyyrpakl
alppdqaaeklrfrrsansltlinptpyyltvtelnagtrvlenalvppmgesavklpsn
ityrtindygaltpkmtgvme