PDB entry 3rd9

View 3rd9 on RCSB PDB site
Description: Human Cyclophilin D Complexed with a Fragment
Class: isomerase/isomerase inhibitor
Keywords: beta barrel, prolyl cis/trans isomerase, mitochondria, inhibitor, ISOMERASE-ISOMERASE INHIBITOR complex
Deposited on 2011-04-01, released 2012-03-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2016-10-19, with a file datestamp of 2016-10-14.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'X':
    Compound: Peptidyl-prolyl cis-trans isomerase F, mitochondrial
    Species: Homo sapiens [TaxId:9606]
    Gene: PPIF, CYP3
    Database cross-references and differences (RAF-indexed):
    • Uniprot P30405 (Start-165)
      • engineered mutation (133)
    Domains in SCOPe 2.08: d3rd9x_
  • Heterogens: MSY, PEG, HOH

PDB Chain Sequences:

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >3rd9X (X:)
msgnplvyldvdangkplgrvvlelkadvvpktaenfralctgekgfgykgstfhrvips
fmcqagdftnhngtggksiygsrfpdenftlkhvgpgvlsmanagpntngsqffictikt
dwldgkhvvfghviegmdvvkkiesfgsksgrtskkivitdcgqls

    Sequence, based on observed residues (ATOM records): (download) 
    >3rd9X (X:)
gnplvyldvdangkplgrvvlelkadvvpktaenfralctgekgfgykgstfhrvipsfm
cqagdftnhngtggksiygsrfpdenftlkhvgpgvlsmanagpntngsqffictiktdw
ldgkhvvfghviegmdvvkkiesfgsksgrtskkivitdcgqls