PDB entry 3ra4

View 3ra4 on RCSB PDB site
Description: Structural studies of AAV8 capsid transitions associated with endosomal trafficking
Class: virus
Keywords: beta barrel, Viral Capsid, Receptor, VIRUS
Deposited on 2011-03-27, released 2011-09-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-06-26, with a file datestamp of 2013-06-21.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.212
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Adeno-associated virus - 8 [TaxId:202813]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ra4a_
  • Chain 'D':
    Compound: DNA (5'-d(*cp*a)-3')
    Species: Aequorea victoria [TaxId:6100]
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ra4A (A:)
dgvgsssgnwhcdstwlgdrvittstrtwalptynnhlykqisngtsggatndntyfgys
tpwgyfdfnrfhchfsprdwqrlinnnwgfrpkrlsfklfniqvkevtqnegtktiannl
tstiqvftdseyqlpyvlgsahqgclppfpadvfmipqygyltlnngsqavgrssfycle
yfpsqmlrtgnnfqftytfedvpfhssyahsqsldrlmnplidqylyylsrtqttggtan
tqtlgfsqggpntmanqaknwlpgpcyrqqrvstttgqnnnsnfawtagtkyhlngrnsl
anpgiamathkddeerffpsngilifgkqnaardnadysdvmltseeeikttnpvateey
givadnlqqqntapqigtvnsqgalpgmvwqnrdvylqgpiwakiphtdgnfhpsplmgg
fglkhpppqilikntpvpadppttfnqsklnsfitqystgqvsveiewelqkenskrwnp
eiqytsnyykstsvdfavntegvyseprpigtryltrnl

  • Chain 'D':
    No sequence available.