PDB entry 3r8n

View 3r8n on RCSB PDB site
Description: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding
Class: ribosome
Keywords: Protein biosynthesis, RNA, tRNA, transfer RNA, 30S, 70S, 16S, ribosomal subunit, ribosome recycling factor, RRF, RIBOSOME
Deposited on 2011-03-24, released 2011-06-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-10-24, with a file datestamp of 2012-10-19.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.203
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: 16s rRNA
  Species: Escherichia coli [TaxId:562]
  
• Chain 'B':
  Compound: 30S ribosomal protein S2
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7V0 (0-217)
• Chain 'C':
  Compound: 30S ribosomal protein S3
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7V3 (0-205)
• Chain 'D':
  Compound: 30S ribosomal protein S4
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7V8 (0-204)
• Chain 'E':
  Compound: 30S ribosomal protein S5
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7W1 (0-149)
• Chain 'F':
  Compound: 30S ribosomal protein S6
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02358 (0-99)
• Chain 'G':
  Compound: 30S ribosomal protein S7
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02359 (0-150)
• Chain 'H':
  Compound: 30S ribosomal protein S8
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7W7 (0-128)
• Chain 'I':
  Compound: 30S ribosomal protein S9
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7X3 (0-126)
• Chain 'J':
  Compound: 30S ribosomal protein S10
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7R5 (0-97)
• Chain 'K':
  Compound: 30S ribosomal protein S11
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7R9 (0-116)
• Chain 'L':
  Compound: 30S ribosomal protein S12
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7S3 (0-122)
• Chain 'M':
  Compound: 30S ribosomal protein S13
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7S9 (0-113)
• Chain 'N':
  Compound: 30S ribosomal protein S14
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0AG59 (0-99)
• Chain 'O':
  Compound: 30S ribosomal protein S15
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0ADZ4 (0-87)
• Chain 'P':
  Compound: 30S ribosomal protein S16
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7T3 (0-81)
• Chain 'Q':
  Compound: 30S ribosomal protein S17
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0AG63 (0-79)
• Chain 'R':
  Compound: 30S ribosomal protein S18
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7T7 (0-54)
• Chain 'S':
  Compound: 30S ribosomal protein S19
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7U3 (0-78)
• Chain 'T':
  Compound: 30S ribosomal protein S20
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A7U7 (0-84)
• Chain 'U':
  Compound: 30S ribosomal protein S21
  Species: Escherichia coli [TaxId:83333]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P68679 (0-50)
• Chain 'V':
  Compound: phenylalanine specific transfer RNA
  Species: Escherichia coli [TaxId:83333]
  Gene: pheV
  
• Chain 'X':
  Compound: messenger RNA
  
• Chain 'Y':
  Compound: ribosome recycling factor
  Species: Escherichia coli [TaxId:83333]
  Gene: rrf
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0A805 (1-182)
    • expression tag (0)
  Domains in SCOPe 2.08: d3r8ny1, d3r8ny2

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  No sequence available.
  
  
• Chain 'M':
  No sequence available.
  
  
• Chain 'N':
  No sequence available.
  
  
• Chain 'O':
  No sequence available.
  
  
• Chain 'P':
  No sequence available.
  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  No sequence available.
  
  
• Chain 'S':
  No sequence available.
  
  
• Chain 'T':
  No sequence available.
  
  
• Chain 'U':
  No sequence available.
  
  
• Chain 'V':
  No sequence available.
  
  
• Chain 'X':
  No sequence available.
  
  
• Chain 'Y':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3r8nY (Y:)
  gisdirkdaevrmdkcveafktqiskirtgraspslldgivveyygtptplrqlasvtve
  dsrtlkinvfdrsmspavekaimasdlglnpnsagsdirvplpplteerrkdltkivrge
  aeqarvavrnvrrdandkvkallkdkeisedddrrsqddvqkltdaaikkieaaladkea
  elm