PDB entry 3r5f
View 3r5f on RCSB PDB site
Description: Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with ATP
Class: ligase
Keywords: XoDdl-ATP complex, ATP-grasp domain, ligase
Deposited on
2011-03-18, released
2011-05-25
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-05-25, with a file datestamp of
2011-05-20.
Experiment type: XRAY
Resolution: 2.07 Å
R-factor: 0.211
AEROSPACI score: 0.39
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: D-alanine--D-alanine ligase 1
Species: Xanthomonas oryzae pv. oryzae [TaxId:291331]
Database cross-references and differences (RAF-indexed):
- Uniprot Q2P8P8
- engineered mutation (343)
Domains in SCOPe 2.03: d3r5fa1, d3r5fa2 - Heterogens: ATP, MG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3r5fA (A:)
hhhhhhhssenlyfqghmrkirvglifggksaehevslqsarnildaldpqrfepvligi
dkqgqwhvndpdsfllhaddparialhrsgrgvallpgaqqqqlrpiqpeqalaqidvvf
pivhgtlgedgslqgllrmanlpfvgsgvlgsavamdkdmakrvlrdarlavapfvcfdr
htaahadvdtliaqlglplfvkpanqgssvgvsqvrtadafaaalalalaydhkvlveaa
vagreiecavlgnavphasvcgevvvhdafysyatkyisehgaeivipadidaqtqqriq
qiavqayqalgcagmarvdvflcadgrivinevntlpgftrisvypklwqasgldyrgli
trlielalerhtddqllrsavelh
Sequence, based on observed residues (ATOM records): (download)
>3r5fA (A:)
kirvglifggksaehevslqsarnildaldpqrfepvligidkqgqwhvndpdsfllhad
dparialhrsgrgvallpgaqqqqlrpiqalaqidvvfpivhgtlgedgslqgllrmanl
pfvgsgvlgsavamdkdmakrvlrdarlavapfvcfdrhtaahadvdtliaqlglplfvk
panqgssvgvsqvrtadafaaalalalaydhkvlveaavagreiecavlgnavphasvcg
evvveivipadidaqtqqriqqiavqayqalgcagmarvdvflcadgrivinevntlpgf
trisvypklwqasgldyrglitrlielalerhtddqllrsave