PDB entry 3r4d
View 3r4d on RCSB PDB site
Description: Crystal structure of mouse coronavirus receptor-binding domain complexed with its murine receptor
Class: cell adhesion/viral protein
Keywords: immunoglobulin, beta-sandwich, mCEACAM1a - immunoglobulin fold MHV spike NTD - galectin-like beta-sandwich fold, mCEACAM1a - cell adhesion MHV spike NTD - mCEACAM1a binding, mCEACAM1a - itself and MHV spike NTD MHV spike NTD - mCEACAM1a, N-glycosylations, mCEACAM1a - 37, 55, 70 MHV spike NTD - 192, CELL ADHESION-VIRAL PROTEIN complex
Deposited on
2011-03-17, released
2011-06-22
The last revision prior to the SCOPe 2.06 freeze date was dated
2014-10-29, with a file datestamp of
2014-10-24.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.248
AEROSPACI score: 0.11
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: CEA-related cell adhesion molecule 1, isoform 1/2S
Species: Mus musculus [TaxId:10090]
Gene: Ceacam1, CEACAM1a-2S, mCG_126985
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3r4da1, d3r4da2 - Chain 'B':
Compound: Spike glycoprotein
Species: Murine hepatitis virus [TaxId:11138]
Gene: orf3
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: CEA-related cell adhesion molecule 1, isoform 1/2S
Species: Mus musculus [TaxId:10090]
Gene: Ceacam1, CEACAM1a-2S, mCG_126985
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d3r4dc1, d3r4dc2 - Chain 'D':
Compound: Spike glycoprotein
Species: Murine hepatitis virus [TaxId:11138]
Gene: orf3
Database cross-references and differences (RAF-indexed):
- Heterogens: NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3r4dA (A:)
evtieavppqvaednnvlllvhnlplalgafawykgnttaidkeiarfvpnsnmnftgqa
ysgreiiysngsllfqmitmkdmgvytldmtdenyrrtqatvrfhvhqpvtqpflqvtnt
tvkeldsvtltclsndiganiqwlfnsqslqltermtlsqnnsilridpikredageyqc
eisnpvsvrrsnsikldiifdphhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3r4dA (A:)
evtieavppqvaednnvlllvhnlplalgafawykgnttaidkeiarfvpnsnmnftgqa
ysgreiiysngsllfqmitmkdmgvytldmtdenyrrtqatvrfhvhqpvtqpflqvtnt
tvkeldsvtltclsndiganiqwlfnsqslqltermtlsqnnsilridpikredageyqc
eisnpvsvrrsnsikldii
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3r4dC (C:)
evtieavppqvaednnvlllvhnlplalgafawykgnttaidkeiarfvpnsnmnftgqa
ysgreiiysngsllfqmitmkdmgvytldmtdenyrrtqatvrfhvhqpvtqpflqvtnt
tvkeldsvtltclsndiganiqwlfnsqslqltermtlsqnnsilridpikredageyqc
eisnpvsvrrsnsikldiifdphhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3r4dC (C:)
evtieavppqvaednnvlllvhnlplalgafawykgnttaidkeiarfvpnsnmnftgqa
ysgreiiysngsllfqmitmkdmgvytldmtdenyrrtqatvrfhvhqpvtqpflqvtnt
tvkeldsvtltclsndiganiqwlfnsqslqltermtlsqnnsilridpikredageyqc
eisnpvsvrrsnsikldii
- Chain 'D':
No sequence available.