PDB entry 3qzw
View 3qzw on RCSB PDB site
Description: Plasticity of human CD8 binding to peptide-HLA-A*2402
Class: immune system
Keywords: Immunoglobulin family, IMMUNE SYSTEM, coreceptor
Deposited on
2011-03-07, released
2011-06-29
The last revision prior to the SCOPe 2.02 freeze date was dated
2011-06-29, with a file datestamp of
2011-06-24.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.205
AEROSPACI score: 0.27
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class I histocompatibility antigen, A-24 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A, HLAA
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3qzwb_ - Chain 'C':
Compound: 10-mer peptide from Protein Nef
Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: HLA class I histocompatibility antigen, A-24 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-A, HLAA
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Gene: B2M, CDABP0092, HDCMA22P
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3qzwe_ - Chain 'F':
Compound: 10-mer peptide from Protein Nef
Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: T-cell surface glycoprotein CD8 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: CD8A, MAL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3qzwg_ - Chain 'H':
Compound: T-cell surface glycoprotein CD8 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: CD8A, MAL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3qzwh_ - Chain 'I':
Compound: T-cell surface glycoprotein CD8 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: CD8A, MAL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3qzwi_ - Chain 'J':
Compound: T-cell surface glycoprotein CD8 alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: CD8A, MAL
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3qzwj_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3qzwB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3qzwE (E:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
- Chain 'F':
No sequence available.
- Chain 'G':
Sequence; same for both SEQRES and ATOM records: (download)
>3qzwG (G:)
sqfrvspldrtwnlgetvelkcqvllsnptsgcswlfqprgaaasptfllylsqnkpkaa
egldtqrfsgkrlgdtfvltlsdfrrenegyyfcsalsnsimyfshfvpvflpa
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>3qzwH (H:)
sqfrvspldrtwnlgetvelkcqvllsnptsgcswlfqprgaaasptfllylsqnkpkaa
egldtqrfsgkrlgdtfvltlsdfrrenegyyfcsalsnsimyfshfvpvflpa
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>3qzwI (I:)
sqfrvspldrtwnlgetvelkcqvllsnptsgcswlfqprgaaasptfllylsqnkpkaa
egldtqrfsgkrlgdtfvltlsdfrrenegyyfcsalsnsimyfshfvpvflpa
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>3qzwJ (J:)
sqfrvspldrtwnlgetvelkcqvllsnptsgcswlfqprgaaasptfllylsqnkpkaa
egldtqrfsgkrlgdtfvltlsdfrrenegyyfcsalsnsimyfshfvpvflpa