PDB entry 3qsi

View 3qsi on RCSB PDB site
Description: Nickel binding domain of NikR from Helicobacter pylori disclosing partial metal occupancy
Class: metal binding protein
Keywords: NIKR, nickel, Helicobacter pylori, DNA-binding, transcription regulator, metal binding protein
Deposited on 2011-02-21, released 2012-04-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 3.08 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsia_
  • Chain 'B':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsib_
  • Chain 'C':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsic_
  • Chain 'D':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsid_
  • Chain 'E':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsie_
  • Chain 'F':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsif_
  • Chain 'G':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsig_
  • Chain 'H':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsih_
  • Chain 'I':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsii_
  • Chain 'J':
    Compound: NikR nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:210]
    Gene: HP_1338
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3qsij_
  • Heterogens: NI, SO4

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3qsiA (A:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiA (A:)
eskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiq
rlqleigglrgvkfakltka

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3qsiB (B:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiB (B:)
kiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrl
qleigglrgvkfakltkassf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3qsiC (C:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiC (C:)
skiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqr
lqleigglrgvkfakltkas

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3qsiD (D:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiD (D:)
kiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrl
qleigglrgvkfakltkas

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3qsiE (E:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiE (E:)
skiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqr
lqleigglrgvkfakltkas

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3qsiF (F:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiF (F:)
kiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrl
qleigglrgvkfakltka

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3qsiG (G:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiG (G:)
kiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrl
qleigglrgvkfakltkas

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3qsiH (H:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiH (H:)
kiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrl
qleigglrgvkfakltkass

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3qsiI (I:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiI (I:)
kiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrl
qleigglrgvkfakltkas

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >3qsiJ (J:)
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3qsiJ (J:)
kiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrl
qleigglrgvkfakltkas