PDB entry 3qnd

View 3qnd on RCSB PDB site
Description: crystal structure of Ad37 fiber knob in complex with trivalent sialic acid inhibitor
Class: cell adhesion/inhibitor
Keywords: fiber knob, protein carbohydrate interaction, carbohydrate mimetic, multivalent ligand, viral protein-inhibitor complex, CELL ADHESION-INHIBITOR complex
Deposited on 2011-02-08, released 2011-06-15
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-08-10, with a file datestamp of 2011-08-05.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.223
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: fiber protein
    Species: HUMAN ADENOVIRUS 37 [TaxId:52275]
    Gene: L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3qnda_
  • Chain 'B':
    Compound: fiber protein
    Species: HUMAN ADENOVIRUS 37 [TaxId:52275]
    Gene: L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3qndb_
  • Chain 'C':
    Compound: fiber protein
    Species: HUMAN ADENOVIRUS 37 [TaxId:52275]
    Gene: L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3qndc_
  • Chain 'E':
    Compound: fiber protein
    Species: HUMAN ADENOVIRUS 37 [TaxId:52275]
    Gene: L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3qnde_
  • Chain 'F':
    Compound: fiber protein
    Species: HUMAN ADENOVIRUS 37 [TaxId:52275]
    Gene: L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3qndf_
  • Chain 'G':
    Compound: fiber protein
    Species: HUMAN ADENOVIRUS 37 [TaxId:52275]
    Gene: L5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3qndg_
  • Heterogens: ZN, SIA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3qndA (A:)
gamgswnpkydtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyh
iinnktnpkiksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlv
aypkpsnskkyardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenve
fettsftfsyiaqe

    Sequence, based on observed residues (ATOM records): (download) 
    >3qndA (A:)
dtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyhiinnktnpki
ksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlvaypkpsnskk
yardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenvefettsftfsy
iaqe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3qndB (B:)
gamgswnpkydtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyh
iinnktnpkiksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlv
aypkpsnskkyardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenve
fettsftfsyiaqe

    Sequence, based on observed residues (ATOM records): (download) 
    >3qndB (B:)
ydtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyhiinnktnpk
iksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlvaypkpsnsk
kyardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenvefettsftfs
yiaqe

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3qndC (C:)
gamgswnpkydtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyh
iinnktnpkiksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlv
aypkpsnskkyardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenve
fettsftfsyiaqe

    Sequence, based on observed residues (ATOM records): (download) 
    >3qndC (C:)
trtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyhiinnktnpkik
sftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlvaypkpsnskky
ardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenvefettsftfsyi
aqe

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3qndE (E:)
gamgswnpkydtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyh
iinnktnpkiksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlv
aypkpsnskkyardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenve
fettsftfsyiaqe

    Sequence, based on observed residues (ATOM records): (download) 
    >3qndE (E:)
dtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyhiinnktnpki
ksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlvaypkpsnskk
yardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenvefettsftfsy
iaqe

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3qndF (F:)
gamgswnpkydtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyh
iinnktnpkiksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlv
aypkpsnskkyardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenve
fettsftfsyiaqe

    Sequence, based on observed residues (ATOM records): (download) 
    >3qndF (F:)
dtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyhiinnktnpki
ksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlvaypkpsnskk
yardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenvefettsftfsy
iaqe

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3qndG (G:)
gamgswnpkydtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyh
iinnktnpkiksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlv
aypkpsnskkyardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenve
fettsftfsyiaqe

    Sequence, based on observed residues (ATOM records): (download) 
    >3qndG (G:)
dtrtlwttpdtspnctiaqdkdskltlvltkcgsqilanvslivvagkyhiinnktnpki
ksftikllfnkngvlldnsnlgkaywnfrsgnsnvstayekaigfmpnlvaypkpsnskk
yardivygtiylggkpdqpavikttfnqetgceysitfnfswsktyenvefettsftfsy
iaqe