PDB entry 3qi5
View 3qi5 on RCSB PDB site
Description: Crystal structure of human alkyladenine DNA glycosylase in complex with 3,N4-ethenocystosine containing duplex DNA
Class: hydrolase/DNA
Keywords: alkyladenine DNA glycosylase fold, AAG, Excision, DNA repair, DNA binding, Nucleus, HYDROLASE-DNA complex
Deposited on
2011-01-26, released
2011-03-09
The last revision prior to the SCOPe 2.08 freeze date was dated
2012-01-18, with a file datestamp of
2012-01-13.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.239
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA-3-methyladenine glycosylase
Species: Homo sapiens [TaxId:9606]
Gene: MPG, AAG, ANPG, MID1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3qi5a1, d3qi5a2 - Chain 'B':
Compound: DNA-3-methyladenine glycosylase
Species: Homo sapiens [TaxId:9606]
Gene: MPG, AAG, ANPG, MID1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3qi5b1, d3qi5b2 - Chain 'C':
Compound: DNA (5'-d(*gp*ap*cp*ap*tp*gp*(edc)p*tp*tp*gp*cp*cp*t)-3')
- Chain 'D':
Compound: DNA (5'-d(*gp*gp*cp*ap*ap*gp*cp*ap*tp*gp*tp*cp*a)-3')
- Chain 'E':
Compound: DNA (5'-d(*gp*ap*cp*ap*tp*gp*(edc)p*tp*tp*gp*cp*cp*t)-3')
- Chain 'F':
Compound: DNA (5'-d(*gp*gp*cp*ap*ap*gp*cp*ap*tp*gp*tp*cp*a)-3')
- Heterogens: MN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3qi5A (A:)
gphmtrlgleffdqpavplaraflgqvlvrrlpngtelrgriveteaylgpedeaahsrg
grqtprnrgmfmkpgtlyvyiiygmyfcmnissqgdgacvllraleplegletmrqlrst
lrkgtasrvlkdrelcsgpsklcqalainksfdqrdlaqdeavwlergplepsepavvaa
arvgvghagewarkplrfyvrgspwvsvvdrvaeqdtqa
Sequence, based on observed residues (ATOM records): (download)
>3qi5A (A:)
gphmtrlgleffdqpavplaraflgqvlvrrlpngtelrgriveteaylgpedeaahsrg
grqtprnrgmfmkpgtlyvyiiygmyfcmnissqgdgacvllraleplegletmrqlrst
lrkvlkdrelcsgpsklcqalainksfdqrdlaqdeavwlergplepsepavvaaarvgv
ewarkplrfyvrgspwvsvvdrvaeq
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3qi5B (B:)
gphmtrlgleffdqpavplaraflgqvlvrrlpngtelrgriveteaylgpedeaahsrg
grqtprnrgmfmkpgtlyvyiiygmyfcmnissqgdgacvllraleplegletmrqlrst
lrkgtasrvlkdrelcsgpsklcqalainksfdqrdlaqdeavwlergplepsepavvaa
arvgvghagewarkplrfyvrgspwvsvvdrvaeqdtqa
Sequence, based on observed residues (ATOM records): (download)
>3qi5B (B:)
gphmtrlgleffdqpavplaraflgqvlvrrlpngtelrgriveteaylgpedeaahsrg
grqtprnrgmfmkpgtlyvyiiygmyfcmnissqgdgacvllraleplegletmrqlrst
lrkgtrvlkdrelcsgpsklcqalainksfdqrdlaqdeavwlergplepsepavvaaar
vgvagewarkplrfyvrgspwvsvvdrvae
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.