PDB entry 3qeh
View 3qeh on RCSB PDB site
Description: Crystal structure of human N12-i15, an ADCC and non-neutralizing anti-HIV-1 Env antibody
Class: immune system
Keywords: ADCC and non-neutralizing anti-HIV-1 Env antibody N12-i15, CD4i antibody, Fab fragment, binds to viral glycoprotein gp120, IMMUNE SYSTEM
Deposited on
2011-01-20, released
2012-01-25
The last revision prior to the SCOPe 2.04 freeze date was dated
2012-01-25, with a file datestamp of
2012-01-20.
Experiment type: XRAY
Resolution: 2.59 Å
R-factor: 0.218
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Fab fragment of human anti-HIV-1 Env antibody N12-i15, heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Fab fragment of human anti-HIV-1 Env antibody N12-i15,light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3qehb1, d3qehb2 - Chain 'C':
Compound: Fab fragment of human anti-HIV-1 Env antibody N12-i15, heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Fab fragment of human anti-HIV-1 Env antibody N12-i15,light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3qehd1, d3qehd2 - Chain 'E':
Compound: Fab fragment of human anti-HIV-1 Env antibody N12-i15, heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Fab fragment of human anti-HIV-1 Env antibody N12-i15,light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3qehf1, d3qehf2 - Chain 'G':
Compound: Fab fragment of human anti-HIV-1 Env antibody N12-i15, heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: Fab fragment of human anti-HIV-1 Env antibody N12-i15,light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3qehh1, d3qehh2 - Heterogens: SO4, CL, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3qehB (B:)
divmtqsplslpvtpgeaasiscrssqsllhtngfqyldwylqkpgqspqlliylgsnra
tgvphrfsgsgsgteftlkisrveaedvgvyycmqakesptfgqgtkveikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3qehB (B:)
divmtqsplslpvtpgeaasiscrssqsllhtngfqyldwylqkpgqspqlliylgsnra
tgvphrfsgsgsgteftlkisrveaedvgvyycmqakesptfgqgtkveikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqglsspvtksfnr
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3qehD (D:)
divmtqsplslpvtpgeaasiscrssqsllhtngfqyldwylqkpgqspqlliylgsnra
tgvphrfsgsgsgteftlkisrveaedvgvyycmqakesptfgqgtkveikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3qehD (D:)
divmtqsplslpvtpgeaasiscrssqsllhtngfqyldwylqkpgqspqlliylgsnra
tgvphrfsgsgsgteftlkisrveaedvgvyycmqakesptfgqgtkveikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqglsspvtksfnr
- Chain 'E':
No sequence available.
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3qehF (F:)
divmtqsplslpvtpgeaasiscrssqsllhtngfqyldwylqkpgqspqlliylgsnra
tgvphrfsgsgsgteftlkisrveaedvgvyycmqakesptfgqgtkveikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3qehF (F:)
divmtqsplslpvtpgeaasiscrssqsllhtngfqyldwylqkpgqspqlliylgsnra
tgvphrfsgsgsgteftlkisrveaedvgvyycmqakesptfgqgtkveikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnr
- Chain 'G':
No sequence available.
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3qehH (H:)
divmtqsplslpvtpgeaasiscrssqsllhtngfqyldwylqkpgqspqlliylgsnra
tgvphrfsgsgsgteftlkisrveaedvgvyycmqakesptfgqgtkveikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqglsspvtksfnrgec
Sequence, based on observed residues (ATOM records): (download)
>3qehH (H:)
ivmtqsplslpvtpgeaasiscrssqsllhtngfqyldwylqkpgqspqlliylgsnrat
gvphrfsgsgsgteftlkisrveaedvgvyycmqakesptfgqgtkveikrtvaapsvfi
fppdeqlkssvvcllnnfpreqwkqsgnsqesvteqdskdstyslsstladyekhyacev
thqglpvtksfnr