PDB entry 3qcv
View 3qcv on RCSB PDB site
Description: Crystal structure of the LT3015 antibody Fab fragment in complex with lysophosphatidic acid (18:2)
Class: immune system
Keywords: antibody, lysophosphatidic acid binding, IMMUNE SYSTEM
Deposited on
2011-01-17, released
2011-03-30
The last revision prior to the SCOPe 2.08 freeze date was dated
2017-11-08, with a file datestamp of
2017-11-03.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: LT3015 antibody Fab fragment, heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: DKFZp686P15220
Database cross-references and differences (RAF-indexed):
- PDB 3QCT (0-117)
- Uniprot Q6N089 (118-222)
Domains in SCOPe 2.08: d3qcvh_ - Chain 'I':
Compound: LT3015 antibody Fab fragment, heavy chain
Species: Homo sapiens [TaxId:9606]
Gene: DKFZp686P15220
Database cross-references and differences (RAF-indexed):
- PDB 3QCT (0-117)
- Uniprot Q6N089 (118-222)
Domains in SCOPe 2.08: d3qcvi_ - Chain 'L':
Compound: LT3015 antibody Fab fragment, light chain
Species: Homo sapiens [TaxId:9606]
Gene: IGKC
Database cross-references and differences (RAF-indexed):
- PDB 3QCT (0-112)
- Uniprot P01834 (113-217)
Domains in SCOPe 2.08: d3qcvl1, d3qcvl2 - Chain 'M':
Compound: LT3015 antibody Fab fragment, light chain
Species: Homo sapiens [TaxId:9606]
Gene: IGKC
Database cross-references and differences (RAF-indexed):
- PDB 3QCT (0-112)
- Uniprot P01834 (113-217)
Domains in SCOPe 2.08: d3qcvm1, d3qcvm2 - Heterogens: 18L, HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3qcvH (H:)
evqlvqsgaevkkpgeslkiscqafgygfinyliewirqmpgqglewiglinpgsdytny
nenfkgqatlsadkssstaylqwsslkasdtamyfcarrfgyygsgnyfdywgqgtmvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk
Sequence, based on observed residues (ATOM records): (download)
>3qcvH (H:)
evqlvqsgaevkkpgeslkiscqafgygfinyliewirqmpgqglewiglinpgsdytny
nenfkgqatlsadkssstaylqwsslkasdtamyfcarrfgyygsgnyfdywgqgtmvtv
ssastkgpsvfplapssggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk
- Chain 'I':
Sequence, based on SEQRES records: (download)
>3qcvI (I:)
evqlvqsgaevkkpgeslkiscqafgygfinyliewirqmpgqglewiglinpgsdytny
nenfkgqatlsadkssstaylqwsslkasdtamyfcarrfgyygsgnyfdywgqgtmvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk
Sequence, based on observed residues (ATOM records): (download)
>3qcvI (I:)
evqlvqsgaevkkpgeslkiscqafgygfinyliewirqmpgqglewiglinpgsdytny
nenfkgqatlsadkssstaylqwsslkasdtamyfcarrfgyygsgnyfdywgqgtmvtv
ssastkgpsvfplapssggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>3qcvL (L:)
dvvmtqtplslpvtpgepasisctsgqslvhingntylhwylqkpgqspklliykvsnlf
sgvpdrfsgsgsgtdftlkisrveaedvgvyfcsqsthfpftfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrge
- Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)
>3qcvM (M:)
dvvmtqtplslpvtpgepasisctsgqslvhingntylhwylqkpgqspklliykvsnlf
sgvpdrfsgsgsgtdftlkisrveaedvgvyfcsqsthfpftfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrge