PDB entry 3qcu

View 3qcu on RCSB PDB site
Description: Crystal structure of the LT3015 antibody Fab fragment in complex with lysophosphatidic acid (14:0)
Class: immune system
Keywords: antibody, lysophosphatidic acid binding, IMMUNE SYSTEM
Deposited on 2011-01-17, released 2011-03-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 1.98 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: LT3015 antibody Fab fragment, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Gene: DKFZp686P15220
    Database cross-references and differences (RAF-indexed):
    • PDB 3QCT (0-117)
    • Uniprot Q6N089 (118-222)
    Domains in SCOPe 2.08: d3qcuh_
  • Chain 'I':
    Compound: LT3015 antibody Fab fragment, heavy chain
    Species: Homo sapiens [TaxId:9606]
    Gene: DKFZp686P15220
    Database cross-references and differences (RAF-indexed):
    • PDB 3QCT (0-117)
    • Uniprot Q6N089 (118-222)
    Domains in SCOPe 2.08: d3qcui_
  • Chain 'L':
    Compound: LT3015 antibody Fab fragment, light chain
    Species: Homo sapiens [TaxId:9606]
    Gene: IGKC
    Database cross-references and differences (RAF-indexed):
    • PDB 3QCT (0-112)
    • Uniprot P01834 (113-217)
    Domains in SCOPe 2.08: d3qcul1, d3qcul2
  • Chain 'M':
    Compound: LT3015 antibody Fab fragment, light chain
    Species: Homo sapiens [TaxId:9606]
    Gene: IGKC
    Database cross-references and differences (RAF-indexed):
    • PDB 3QCT (0-112)
    • Uniprot P01834 (113-217)
    Domains in SCOPe 2.08: d3qcum1, d3qcum2
  • Heterogens: NKN, HOH

PDB Chain Sequences:

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3qcuH (H:)
evqlvqsgaevkkpgeslkiscqafgygfinyliewirqmpgqglewiglinpgsdytny
nenfkgqatlsadkssstaylqwsslkasdtamyfcarrfgyygsgnyfdywgqgtmvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

    Sequence, based on observed residues (ATOM records): (download) 
    >3qcuH (H:)
evqlvqsgaevkkpgeslkiscqafgygfinyliewirqmpgqglewiglinpgsdytny
nenfkgqatlsadkssstaylqwsslkasdtamyfcarrfgyygsgnyfdywgqgtmvtv
ssastkgpsvfplapssggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3qcuI (I:)
evqlvqsgaevkkpgeslkiscqafgygfinyliewirqmpgqglewiglinpgsdytny
nenfkgqatlsadkssstaylqwsslkasdtamyfcarrfgyygsgnyfdywgqgtmvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

    Sequence, based on observed residues (ATOM records): (download) 
    >3qcuI (I:)
evqlvqsgaevkkpgeslkiscqafgygfinyliewirqmpgqglewiglinpgsdytny
nenfkgqatlsadkssstaylqwsslkasdtamyfcarrfgyygsgnyfdywgqgtmvtv
ssastkgpsvfplapssggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepk

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3qcuL (L:)
dvvmtqtplslpvtpgepasisctsgqslvhingntylhwylqkpgqspklliykvsnlf
sgvpdrfsgsgsgtdftlkisrveaedvgvyfcsqsthfpftfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrge

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3qcuM (M:)
dvvmtqtplslpvtpgepasisctsgqslvhingntylhwylqkpgqspklliykvsnlf
sgvpdrfsgsgsgtdftlkisrveaedvgvyfcsqsthfpftfgqgtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrge