PDB entry 3q9f

View 3q9f on RCSB PDB site
Description: Crystal Structure of APAH complexed with CAPS
Class: hydrolase
Keywords: HDAC, polyamine, Arginase Fold, Deacetylase, HYDROLASE
Deposited on 2011-01-07, released 2011-03-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-03-30, with a file datestamp of 2011-03-25.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.189
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fa_
  • Chain 'B':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fb_
  • Chain 'C':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fc_
  • Chain 'D':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fd_
  • Chain 'E':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fe_
  • Chain 'F':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9ff_
  • Chain 'G':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fg_
  • Chain 'H':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fh_
  • Chain 'I':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fi_
  • Chain 'J':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fj_
  • Chain 'K':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fk_
  • Chain 'L':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q9fl_
  • Heterogens: CXS, PO4, K, NA, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fA (A:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fB (B:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fC (C:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fD (D:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fE (E:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fF (F:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fG (G:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fH (H:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3q9fI (I:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

    Sequence, based on observed residues (ATOM records): (download) 
    >3q9fI (I:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgva

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >3q9fJ (J:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

    Sequence, based on observed residues (ATOM records): (download) 
    >3q9fJ (J:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgva

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fK (K:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9fL (L:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghhagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag