PDB entry 3q9c

View 3q9c on RCSB PDB site
Description: Crystal Structure of H159A APAH complexed with N8-acetylspermidine
Class: hydrolase
Keywords: HDAC, polyamine, Arginase Fold, Deacetylase, HYDROLASE
Deposited on 2011-01-07, released 2011-03-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-03-30, with a file datestamp of 2011-03-25.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.186
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9ca_
  • Chain 'B':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9cb_
  • Chain 'C':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9cc_
  • Chain 'D':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9cd_
  • Chain 'E':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9ce_
  • Chain 'F':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9cf_
  • Chain 'G':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9cg_
  • Chain 'H':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9ch_
  • Chain 'I':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9ci_
  • Chain 'J':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9cj_
  • Chain 'K':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9ck_
  • Chain 'L':
    Compound: Acetylpolyamine amidohydrolase
    Species: Mycoplana ramosa [TaxId:40837]
    Gene: aphA, aph
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48935 (0-340)
      • engineered mutation (158)
    Domains in SCOPe 2.08: d3q9cl_
  • Heterogens: Q9C, K, ZN, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cA (A:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cB (B:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cC (C:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cD (D:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cE (E:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cF (F:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cG (G:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cH (H:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cI (I:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cJ (J:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cK (K:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3q9cL (L:)
mrvifsedhklrnaktelyggelvppfeapfraewilaavkeagfddvvaparhgletvl
kvhdagylnfletawdrwkaagykgeaiatsfpvrrtspriptdiegqigyycnaaetai
spgtweaalssmasaidgadliaaghkaafslcrppghaagidmfggycfinnaavaaqr
lldkgakkiaildvdfhhgngtqdifyergdvffaslhgdpaeafphflgyaeetgkgag
agttanypmgrgtpysvwgealtdslkriaafgaeaivvslgvdtfeqdpisffkltspd
yitmgrtiaasgvpllvvmeggygvpeiglnvanvlkgvag