PDB entry 3q83
View 3q83 on RCSB PDB site
Description: Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase
Class: transferase
Keywords: Ferridoxin fold, alpha-beta protein family, Nucleoside diphosphate kinases (NDKs) catalyze the transfer of a gamma phosphate from nucleoside triphosphates to nucleoside diphosphate, Nucleotide binding, Metal binding, Phosphorylation, Kinase, Nucleotide metabolism, Transferase
Deposited on
2011-01-06, released
2011-07-27
The last revision prior to the SCOPe 2.07 freeze date was dated
2013-06-26, with a file datestamp of
2013-06-21.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.215
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
Gene: ndk, SACOL1509
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3q83a_ - Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
Gene: ndk, SACOL1509
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3q83b_ - Chain 'C':
Compound: Nucleoside diphosphate kinase
Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
Gene: ndk, SACOL1509
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3q83c_ - Chain 'D':
Compound: Nucleoside diphosphate kinase
Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
Gene: ndk, SACOL1509
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3q83d_ - Chain 'E':
Compound: Nucleoside diphosphate kinase
Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
Gene: ndk, SACOL1509
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3q83e_ - Chain 'F':
Compound: Nucleoside diphosphate kinase
Species: Staphylococcus aureus subsp. aureus [TaxId:93062]
Gene: ndk, SACOL1509
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d3q83f_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3q83A (A:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlyelehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3q83A (A:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlye
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3q83B (B:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlyelehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3q83B (B:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlye
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3q83C (C:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlyelehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3q83C (C:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlye
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3q83D (D:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlyelehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3q83D (D:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlye
- Chain 'E':
Sequence, based on SEQRES records: (download)
>3q83E (E:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlyelehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3q83E (E:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlye
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3q83F (F:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlyelehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3q83F (F:)
mertflmikpdavqrnligevisrierkglklvggklmqvpmelaethygehqgkpfynd
lisfitsapvfamvvegedavnvsrhiigstnpseaspgsirgdlgltvgrniihgsdsl
esaereinlwfneneitsyasprdawlye