PDB entry 3q38

View 3q38 on RCSB PDB site
Description: Crystal structure of P domain from norwalk virus strain vietnam 026 in complex with HBGA type B (triglycan)
Class: viral protein
Keywords: Norovirus, P-Domain, Capsid, Receptor, Histo Blood Group Antigen (HBGA), VIRAL PROTEIN
Deposited on 2010-12-21, released 2011-05-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.28 Å
R-factor: N/A
AEROSPACI score: 0.68 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Norwalk virus [TaxId:11983]
    Gene: capsid protein
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q38a_
  • Chain 'B':
    Compound: capsid protein
    Species: Norwalk virus [TaxId:11983]
    Gene: capsid protein
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3q38b_
  • Heterogens: EDO, IMD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3q38A (A:)
gpgsskpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqll
ptgicafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvis
qrntntvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvgl
asvdanshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidc
lmpqewvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvapt
ngyfrfdswvnqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >3q38A (A:)
skpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgi
cafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrnt
ntvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvd
anshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpq
ewvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyf
rfdswvnqfytlapm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3q38B (B:)
gpgsskpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqll
ptgicafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvis
qrntntvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvgl
asvdanshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidc
lmpqewvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvapt
ngyfrfdswvnqfytlapm

    Sequence, based on observed residues (ATOM records): (download) 
    >3q38B (B:)
skpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgi
cafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrnt
ntnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvdanshf
dqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqewvqh
lyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfrfdsw
vnqfytlapm