PDB entry 3pyl

View 3pyl on RCSB PDB site
Description: Crystal structure of aspartate beta-semialdehide dehydrogenase from Streptococcus pneumoniae with D-2,3-diaminopropionate
Class: oxidoreductase/oxidoreductase inhibitor
Keywords: NADP, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR complex
Deposited on 2010-12-13, released 2012-01-04
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-10-15, with a file datestamp of 2014-10-10.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.201
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: aspartate-semialdehyde dehydrogenase
    Species: Streptococcus pneumoniae [TaxId:406563]
    Gene: CGSSp23BS72_03388
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5MTN0 (Start-357)
      • expression tag (358)
    Domains in SCOPe 2.05: d3pyla1, d3pyla2
  • Chain 'B':
    Compound: aspartate-semialdehyde dehydrogenase
    Species: Streptococcus pneumoniae [TaxId:406563]
    Gene: CGSSp23BS72_03388
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3pylb1, d3pylb2
  • Chain 'C':
    Compound: aspartate-semialdehyde dehydrogenase
    Species: Streptococcus pneumoniae [TaxId:406563]
    Gene: CGSSp23BS72_03388
    Database cross-references and differences (RAF-indexed):
    • Uniprot A5MTN0 (Start-357)
      • expression tag (358-361)
    Domains in SCOPe 2.05: d3pylc1, d3pylc2
  • Chain 'D':
    Compound: aspartate-semialdehyde dehydrogenase
    Species: Streptococcus pneumoniae [TaxId:406563]
    Gene: CGSSp23BS72_03388
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3pyld1, d3pyld2
  • Heterogens: 2RA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3pylA (A:)
mgytvavvgatgavgaqmikmleestlpidkirylasarsagkslkfkdqditieettet
afegvdialfsagsstsakyapyavkagvvvvdntsyfrqnpdvplvvpevnahaldahn
giiacpncstiqmmvalepvrqkwgldriivstyqavsgagmgailetqrelrevlndgv
kpcdlhaeilpsggdkkhypiafnalpqidvftdndytyeemkmtketkkimeddsiavs
atcvripvlsahsesvyietkevapieevkaaiaafpgavleddvahqiypqainavgsr
dtfvgrirkdldaekgihmwvvsdnllkgaawnsvqiaetlherglvrptaelkfelkle
hhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pylA (A:)
gytvavvgatgavgaqmikmleestlpidkirylasarsagkslkfkdqditieetteta
fegvdialfsagsstsakyapyavkagvvvvdntsyfrqnpdvplvvpevnahaldahng
iiacpncstiqmmvalepvrqkwgldriivstyqavsgagmgailetqrelrevlndgvk
pcdlhaeilpsggdkkhypiafnalpqidvftdndytyeemkmtketkkimeddsiavsa
tcvripvlsahsesvyietkevapieevkaaiaafpgavleddvahqiypqainavgsrd
tfvgrirkdldaekgihmwvvsdnllkgaawnsvqiaetlherglvrptaelkfelkl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3pylB (B:)
mgytvavvgatgavgaqmikmleestlpidkirylasarsagkslkfkdqditieettet
afegvdialfsagsstsakyapyavkagvvvvdntsyfrqnpdvplvvpevnahaldahn
giiacpncstiqmmvalepvrqkwgldriivstyqavsgagmgailetqrelrevlndgv
kpcdlhaeilpsggdkkhypiafnalpqidvftdndytyeemkmtketkkimeddsiavs
atcvripvlsahsesvyietkevapieevkaaiaafpgavleddvahqiypqainavgsr
dtfvgrirkdldaekgihmwvvsdnllkgaawnsvqiaetlherglvrptaelkfelkle
hhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pylB (B:)
gytvavvgatgavgaqmikmleestlpidkirylasarsagkslkfkdqditieetteta
fegvdialfsagsstsakyapyavkagvvvvdntsyfrqnpdvplvvpevnahaldahng
iiacpncstiqmmvalepvrqkwgldriivstyqavsgagmgailetqrelrevlndgvk
pcdlhaeilpsggdkkhypiafnalpqidvftdndytyeemkmtketkkimeddsiavsa
tcvripvlsahsesvyietkevapieevkaaiaafpgavleddvahqiypqainavgsrd
tfvgrirkdldaekgihmwvvsdnllkgaawnsvqiaetlherglvrptaelkf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3pylC (C:)
mgytvavvgatgavgaqmikmleestlpidkirylasarsagkslkfkdqditieettet
afegvdialfsagsstsakyapyavkagvvvvdntsyfrqnpdvplvvpevnahaldahn
giiacpncstiqmmvalepvrqkwgldriivstyqavsgagmgailetqrelrevlndgv
kpcdlhaeilpsggdkkhypiafnalpqidvftdndytyeemkmtketkkimeddsiavs
atcvripvlsahsesvyietkevapieevkaaiaafpgavleddvahqiypqainavgsr
dtfvgrirkdldaekgihmwvvsdnllkgaawnsvqiaetlherglvrptaelkfelkle
hhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pylC (C:)
gytvavvgatgavgaqmikmleestlpidkirylasarsagkslkfkdqditieetteta
fegvdialfsagsstsakyapyavkagvvvvdntsyfrqnpdvplvvpevnahaldahng
iiacpncstiqmmvalepvrqkwgldriivstyqavsgagmgailetqrelrevlndgvk
pcdlhaeilpsggdkkhypiafnalpqidvftdndytyeemkmtketkkimeddsiavsa
tcvripvlsahsesvyietkevapieevkaaiaafpgavleddvahqiypqainavgsrd
tfvgrirkdldaekgihmwvvsdnllkgaawnsvqiaetlherglvrptaelkfelkleh
h

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3pylD (D:)
mgytvavvgatgavgaqmikmleestlpidkirylasarsagkslkfkdqditieettet
afegvdialfsagsstsakyapyavkagvvvvdntsyfrqnpdvplvvpevnahaldahn
giiacpncstiqmmvalepvrqkwgldriivstyqavsgagmgailetqrelrevlndgv
kpcdlhaeilpsggdkkhypiafnalpqidvftdndytyeemkmtketkkimeddsiavs
atcvripvlsahsesvyietkevapieevkaaiaafpgavleddvahqiypqainavgsr
dtfvgrirkdldaekgihmwvvsdnllkgaawnsvqiaetlherglvrptaelkfelkle
hhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3pylD (D:)
gytvavvgatgavgaqmikmleestlpidkirylasarsagkslkfkdqditieetteta
fegvdialfsagsstsakyapyavkagvvvvdntsyfrqnpdvplvvpevnahaldahng
iiacpncstiqmmvalepvrqkwgldriivstyqavsgagmgailetqrelrevlndgvk
pcdlhaeilpsggdkkhypiafnalpqidvftdndytyeemkmtketkkimeddsiavsa
tcvripvlsahsesvyietkevapieevkaaiaafpgavleddvahqiypqainavgsrd
tfvgrirkdldaekgihmwvvsdnllkgaawnsvqiaetlherglvrptaelkfel