PDB entry 3pum

View 3pum on RCSB PDB site
Description: Crystal structure of P domain dimer of Norovirus VA207
Class: viral protein
Keywords: Greek Key, Mixed alpha/beta Structure, Receptor Binding, Carbohydrate/Sugar Binding, Capsid, VIRAL PROTEIN
Deposited on 2010-12-06, released 2011-08-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid
    Species: Human calicivirus [TaxId:165510]
    Gene: CAPSID
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q91H09
      • engineered mutation (67)
      • engineered mutation (152)
      • engineered mutation (203)
      • engineered mutation (244)
      • engineered mutation (260)
    Domains in SCOPe 2.08: d3puma_
  • Chain 'B':
    Compound: Capsid
    Species: Human calicivirus [TaxId:165510]
    Gene: CAPSID
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q91H09
      • engineered mutation (67)
      • engineered mutation (152)
      • engineered mutation (203)
      • engineered mutation (244)
      • engineered mutation (260)
    Domains in SCOPe 2.08: d3pumb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3pumA (A:)
sktkaftipvlkisemtnsrfpvpvdqmytsrsegivvqpqngratidgellgttlvspv
svcnfkgnlqaevpgqhqlyqlqltnldgspidptddtpgplgcpdftgllygvasqrgp
gdatrahearidtgsdtfapkigqvrfystssdfetnqpthftpigiyiegnssdfnqwq
lprygghlannnhlapavsplfpgeqilffrsfipgasghtngemdcllpqefvqhfyqe
aatarsevallrfvnpdtgralfesklhkqgfmtiassgdhpiimptngyfrfeawvnqf
yslapvgtgsgrrriq

    Sequence, based on observed residues (ATOM records): (download) 
    >3pumA (A:)
aftipvlkisemtnsrfpvpvdqmytsrsegivvqpqngratidgellgttlvspvsvcn
fkgnlqaevhqlyqlqltnldgspidptddtpgplgcpdftgllygvasqrgpgdatrah
earidtgsdtfapkigqvrfystssdfetnqpthftpigiyiesdfnqwqlprygghlan
nnhlapavsplfpgeqilffrsfipgasghtngemdcllpqefvqhfyqeaatarseval
lrfvnpdtgralfesklhkqgfmtiassgdhpiimptngyfrfeawvnqfyslapv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3pumB (B:)
sktkaftipvlkisemtnsrfpvpvdqmytsrsegivvqpqngratidgellgttlvspv
svcnfkgnlqaevpgqhqlyqlqltnldgspidptddtpgplgcpdftgllygvasqrgp
gdatrahearidtgsdtfapkigqvrfystssdfetnqpthftpigiyiegnssdfnqwq
lprygghlannnhlapavsplfpgeqilffrsfipgasghtngemdcllpqefvqhfyqe
aatarsevallrfvnpdtgralfesklhkqgfmtiassgdhpiimptngyfrfeawvnqf
yslapvgtgsgrrriq

    Sequence, based on observed residues (ATOM records): (download) 
    >3pumB (B:)
ftipvlkisemtnsrfpvpvdqmytsrsegivvqpqngratidgellgttlvspvsvcnf
kgnlqaevpgqhqlyqlqltnldgspidptddtpgplgcpdftgllygvasqrgpgdatr
ahearidtgsdtfapkigqvrfystssdfetnqpthftpigiyiedfnqwqlprygghla
nnnhlapavsplfpgeqilffrsfipgasghtngemdcllpqefvqhfyqeaatarseva
llrfvnpdtgralfesklhkqgfmtiassgdhpiimptngyfrfeawvnqfyslapv