PDB entry 3pu1

View 3pu1 on RCSB PDB site
Description: Crystal Structure of a vesicular stomatitis virus nucleocapsid-polyG complex
Class: viral protein/RNA
Keywords: RNA, nucleocapsid, VIRAL PROTEIN-RNA complex
Deposited on 2010-12-03, released 2011-01-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-04-11, with a file datestamp of 2018-04-06.
Experiment type: XRAY
Resolution: 3.14 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleoprotein
    Species: Vesicular stomatitis Indiana virus [TaxId:11277]
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pu1a_
  • Chain 'B':
    Compound: nucleoprotein
    Species: Vesicular stomatitis Indiana virus [TaxId:11277]
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pu1b_
  • Chain 'C':
    Compound: nucleoprotein
    Species: Vesicular stomatitis Indiana virus [TaxId:11277]
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pu1c_
  • Chain 'D':
    Compound: nucleoprotein
    Species: Vesicular stomatitis Indiana virus [TaxId:11277]
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pu1d_
  • Chain 'E':
    Compound: nucleoprotein
    Species: Vesicular stomatitis Indiana virus [TaxId:11277]
    Gene: N
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pu1e_
  • Chain 'R':
    Compound: RNA (45-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: IUM

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pu1A (A:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpddst
gglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefd
k

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3pu1B (B:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpddst
gglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefd
k

    Sequence, based on observed residues (ATOM records): (download) 
    >3pu1B (B:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpdttn
appqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefdk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3pu1C (C:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpddst
gglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefd
k

    Sequence, based on observed residues (ATOM records): (download) 
    >3pu1C (C:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytptnap
pqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefdk

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3pu1D (D:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpddst
gglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefd
k

    Sequence, based on observed residues (ATOM records): (download) 
    >3pu1D (D:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpdltt
nappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefdk

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pu1E (E:)
svtvkriidntvivpklpanedpveypadyfrkskeiplyinttkslsdlrgyvyqglks
gnvsiihvnsylygalkdirgkldkdwssfginigkagdtigifdlvslkaldgvlpdgv
sdasrtsaddkwlplyllglyrvgrtqmpeyrkklmdgltnqckmineqfeplvpegrdi
fdvwgndsnytkivaavdmffhmfkkhecasfrygtivsrfkdcaalatfghlckitgms
tedvttwilnrevademvqmmlpgqeidkadsympylidfglsskspyssvknpafhfwg
qltalllrstrarnarqpddieytslttagllyayavgssadlaqqfcvgdnkytpddst
gglttnappqgrdvvewlgwfedqnrkptpdmmqyakravmslqglrektigkyaksefd
k

  • Chain 'R':
    No sequence available.